Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_T7_K22
         (1008 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1277 - 35408097-35409080                                         30   2.5  
05_01_0028 + 182528-183852,183967-184127,184872-185116,185330-18...    29   4.4  
12_02_0299 - 17051570-17052474,17053542-17053755                       29   5.9  

>02_05_1277 - 35408097-35409080
          Length = 327

 Score = 30.3 bits (65), Expect = 2.5
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +1

Query: 871 PXXPSPXXPVXXXXPLLSXPXXSPPPP 951
           P  P+P  P     P+L+ P  +PPPP
Sbjct: 57  PSTPAPPPPPPAQPPVLAAPAPAPPPP 83


>05_01_0028 +
           182528-183852,183967-184127,184872-185116,185330-186073
          Length = 824

 Score = 29.5 bits (63), Expect = 4.4
 Identities = 19/78 (24%), Positives = 20/78 (25%), Gaps = 3/78 (3%)
 Frame = +2

Query: 557 PKXPXPPPFXLXXIXXETKXPTAXAXHXXXSXHXYRPKPHXXXXI---XXHXXXPXXXPX 727
           P  P PPP     +   T  P   A       H   P P               P   P 
Sbjct: 54  PDSPPPPPLPTPTVTTPTPPPPPPAPRPPRRHHRIPPPPPPLLPTPPPPPASISPTPAPP 113

Query: 728 XXPPQXPXXXPXAAPTLP 781
             PP  P   P   P  P
Sbjct: 114 LPPPPAPAPPPTPTPKFP 131


>12_02_0299 - 17051570-17052474,17053542-17053755
          Length = 372

 Score = 29.1 bits (62), Expect = 5.9
 Identities = 11/27 (40%), Positives = 12/27 (44%)
 Frame = +1

Query: 871 PXXPSPXXPVXXXXPLLSXPXXSPPPP 951
           P  P P  P     P+ S P   PPPP
Sbjct: 268 PWAPPPAFPFPHLPPIFSPPSPPPPPP 294


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,108,302
Number of Sequences: 37544
Number of extensions: 208649
Number of successful extensions: 788
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 532
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 778
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2963829220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)