Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP08_T7_K19
(799 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 33 0.036
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 33 0.063
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 32 0.11
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 31 0.14
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 30 0.44
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 30 0.44
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 29 0.58
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p... 28 1.8
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 27 4.1
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch... 26 7.2
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 33.5 bits (73), Expect = 0.036
Identities = 26/118 (22%), Positives = 27/118 (22%), Gaps = 6/118 (5%)
Frame = +3
Query: 438 PPXXPXXXPPPXSXXXXXPXXTXXPXXXPPXXXXXSPPXXXXKNXRXXXXPXSXXXXPXX 617
P P PP P PP P + P P
Sbjct: 1103 PVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVP 1162
Query: 618 PPXXXKXPXPXXXXPXPPXXXXXXXXXXXPXXLXLPPPP------PXXPPPXXPPPXP 773
P P P PP P PP P P PPP PP P
Sbjct: 1163 KPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVP 1220
Score = 29.9 bits (64), Expect = 0.44
Identities = 28/127 (22%), Positives = 31/127 (24%), Gaps = 3/127 (2%)
Frame = +3
Query: 396 PXXAXXPXXXPXXX-PPXXPXXXPPPXSXXXXXPXXTXXPXXXPPXXXXX--SPPXXXXK 566
P A P P PP PP P PP +PP
Sbjct: 1097 PSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPS 1156
Query: 567 NXRXXXXPXSXXXXPXXPPXXXKXPXPXXXXPXPPXXXXXXXXXXXPXXLXLPPPPPXXP 746
P S P P P P PP + +PP PP
Sbjct: 1157 GAPPVPKP-SVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPST 1215
Query: 747 PPXXPPP 767
P P P
Sbjct: 1216 APPVPTP 1222
Score = 29.5 bits (63), Expect = 0.58
Identities = 26/123 (21%), Positives = 28/123 (22%), Gaps = 7/123 (5%)
Frame = +3
Query: 426 PXXXPPXX-PXXXPPPXSXXXXXPXXTXXPXXXPPXXXXXSPPXXXXKNXRXXXXPXSXX 602
P PP P PP P PP P + P
Sbjct: 1079 PSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSG 1138
Query: 603 XXPXXPPXXXKXPXPXXXXPXPPXXXXXXXXXXXPXXLXLPPPP------PXXPPPXXPP 764
P P P P P +PP P P PPP P
Sbjct: 1139 APPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAP 1198
Query: 765 PXP 773
P P
Sbjct: 1199 PVP 1201
Score = 28.3 bits (60), Expect = 1.3
Identities = 24/109 (22%), Positives = 26/109 (23%), Gaps = 1/109 (0%)
Frame = +3
Query: 441 PXXPXXXPPPXSXXXXXPXXTXXPXXXPPXXXXXSPPXXXXKNXRXXXXPXSXXXXPXXP 620
P P P P S P P PP P + P P P
Sbjct: 1060 PSAPPPVPAPSSEIPSIPA----PSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVP 1115
Query: 621 PXXXKXPXPXXXXPXPPXXXXXXXXXXXPXXLXLPP-PPPXXPPPXXPP 764
P P PP + PP P P PP P
Sbjct: 1116 APSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKP 1164
Score = 26.6 bits (56), Expect = 4.1
Identities = 25/119 (21%), Positives = 26/119 (21%), Gaps = 1/119 (0%)
Frame = +2
Query: 413 PXXXXXPXPPXPXXXXPPAXLXXXXPPXRNPXPPXXXXPXXXXFPPXPXXQ-KXPXXXXP 589
P P P P P PP P P PP P P P
Sbjct: 1077 PAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVP 1136
Query: 590 XXXXXXXXXTPXXXKXPXPPXPXPXPXXXXXXXXXXXXPXXXPPPPXXXXXPXPPXXPP 766
+ P P P P PP P PP PP
Sbjct: 1137 SGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAG-VPPVPPP 1194
Score = 25.4 bits (53), Expect = 9.5
Identities = 18/78 (23%), Positives = 18/78 (23%)
Frame = +1
Query: 430 PXXPXXXPPXPPRXXPXXXXXPXXPXPPXXXXPXXXXVPPPPXXXKTXXXXTPXXPXXXX 609
P PP PP P PP VP P T P
Sbjct: 1182 PKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPA 1241
Query: 610 PXHPXXXXXTPXPXPXSP 663
P TP SP
Sbjct: 1242 PSSEAPSVSTPRSSVPSP 1259
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 32.7 bits (71), Expect = 0.063
Identities = 11/17 (64%), Positives = 11/17 (64%)
Frame = +3
Query: 723 PPPPPXXPPPXXPPPXP 773
PPPPP PP PPP P
Sbjct: 12 PPPPPGFEPPSQPPPPP 28
Score = 29.1 bits (62), Expect = 0.77
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = +3
Query: 723 PPPPPXXPPPXXPPPXP 773
PPPP PP PPP P
Sbjct: 13 PPPPGFEPPSQPPPPPP 29
Score = 27.9 bits (59), Expect = 1.8
Identities = 12/32 (37%), Positives = 12/32 (37%)
Frame = +1
Query: 493 PXXPXPPXXXXPXXXXVPPPPXXXKTXXXXTP 588
P P PP P PPPP K TP
Sbjct: 10 PPPPPPPGFEPPSQPPPPPPPGYVKKRKNKTP 41
Score = 27.5 bits (58), Expect = 2.4
Identities = 10/21 (47%), Positives = 10/21 (47%)
Frame = +3
Query: 726 PPPPXXPPPXXPPPXPXXXXP 788
PPPP PP PP P P
Sbjct: 9 PPPPPPPPGFEPPSQPPPPPP 29
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 31.9 bits (69), Expect = 0.11
Identities = 19/64 (29%), Positives = 19/64 (29%)
Frame = -3
Query: 566 FXXXGGGGTXXXXGXXXXGGXGXXGXXXXXGXXRGGXGGXXXGXXGGXXXXXXXXXGXXX 387
F GGG G GG G G GG GG G GG G
Sbjct: 190 FGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGG 249
Query: 386 GXXG 375
G G
Sbjct: 250 GLGG 253
Score = 25.8 bits (54), Expect = 7.2
Identities = 17/51 (33%), Positives = 17/51 (33%)
Frame = -1
Query: 760 GXXGGGXXGGGGGRXXXXGXXXXXXXXXXXGGXGXXXXGXGXFXXXGGXXG 608
G GGG G GGG GG G G G F GG G
Sbjct: 184 GHNGGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGF--GGGPGG 232
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 31.5 bits (68), Expect = 0.14
Identities = 23/105 (21%), Positives = 24/105 (22%), Gaps = 1/105 (0%)
Frame = +3
Query: 462 PPPXSXXXXXPXXTXXPXXXPPXXXXXSPPXXXXKNXRXXXXPXSXXXXPXXPPXXXKXP 641
PPP S P P PP P P PP
Sbjct: 376 PPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSA 435
Query: 642 XPXXXXPXPPXXXXXXXXXXXPXX-LXLPPPPPXXPPPXXPPPXP 773
P P P +P PP P PPP P
Sbjct: 436 PPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAP 480
Score = 28.7 bits (61), Expect = 1.0
Identities = 29/127 (22%), Positives = 31/127 (24%), Gaps = 6/127 (4%)
Frame = +3
Query: 405 AXXPXXXPXXXPPXXPXXXPP-PXSXXXXXPXX--TXXPXXXPPXXXXXSPPXXXXKNXR 575
A P P P PP P + P T P PP + K
Sbjct: 252 APPPIPPPSNGTVSSPPNSPPRPIAPVSMNPAINSTSKPPLPPPSSRVSAAALAANKKRP 311
Query: 576 XXXXPXSXXXXPXXPPXXXKXPXPXXXXPXPPXXXXXXXXXXXPXXLXLPPPPPXXPPP- 752
P S P P PP P PPPPP P
Sbjct: 312 PPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPS 371
Query: 753 --XXPPP 767
PPP
Sbjct: 372 TGRQPPP 378
Score = 28.7 bits (61), Expect = 1.0
Identities = 27/131 (20%), Positives = 29/131 (22%)
Frame = +1
Query: 373 PPXXPXXXPXXXXXXXXXPPXXPXXXPPXPPRXXPXXXXXPXXPXPPXXXXPXXXXVPPP 552
PP P P PP PP P P P PP
Sbjct: 362 PPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSA----PALPPLGNASRTSTPPV 417
Query: 553 PXXXKTXXXXTPXXPXXXXPXHPXXXXXTPXPXPXSPXXPXXXXXXXXXXXPXXSXSPXX 732
P P P P P P P +P P P +P
Sbjct: 418 PTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAP-PLPAGMPAAPPLPPAAPAP 476
Query: 733 XPXXXPPXXPP 765
P P P
Sbjct: 477 PPAPAPAPAAP 487
Score = 25.8 bits (54), Expect = 7.2
Identities = 18/86 (20%), Positives = 20/86 (23%)
Frame = +3
Query: 414 PXXXPXXXPPXXPXXXPPPXSXXXXXPXXTXXPXXXPPXXXXXSPPXXXXKNXRXXXXPX 593
P P P P + P P PP +PP P
Sbjct: 392 PPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPP 451
Query: 594 SXXXXPXXPPXXXKXPXPXXXXPXPP 671
S P P P P PP
Sbjct: 452 SAPIAPPLPAGMPAAPPLPPAAPAPP 477
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 29.9 bits (64), Expect = 0.44
Identities = 11/28 (39%), Positives = 13/28 (46%)
Frame = +3
Query: 705 PXXLXLPPPPPXXPPPXXPPPXPXXXXP 788
P + +PPPP P P PP P P
Sbjct: 1709 PPPMSVPPPPSAPPMPAGPPSAPPPPLP 1736
Score = 29.1 bits (62), Expect = 0.77
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = +3
Query: 723 PPPPPXXPPPXXPPPXP 773
PPPP PPP PP P
Sbjct: 1708 PPPPMSVPPPPSAPPMP 1724
Score = 27.1 bits (57), Expect = 3.1
Identities = 12/29 (41%), Positives = 12/29 (41%)
Frame = +1
Query: 427 PPXXPXXXPPXPPRXXPXXXXXPXXPXPP 513
PP P PP PP P P P PP
Sbjct: 1707 PPPPPMSVPP-PPSAPPMPAGPPSAPPPP 1734
Score = 26.2 bits (55), Expect = 5.4
Identities = 12/42 (28%), Positives = 13/42 (30%)
Frame = +1
Query: 430 PXXPXXXPPXPPRXXPXXXXXPXXPXPPXXXXPXXXXVPPPP 555
P P PP P+ P PP P PP P
Sbjct: 1683 PAHPVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMP 1724
Score = 25.8 bits (54), Expect = 7.2
Identities = 25/102 (24%), Positives = 28/102 (27%)
Frame = +1
Query: 223 PHAPHHALCSHDHSG*WSEVTSIREVGDEAPERRGWRAAXXXXXXXXXRXPPXXPXXXPX 402
P AP S S WS+ E D + R + A P P P
Sbjct: 1633 PPAPSPLQPSGHDSDNWSQHGD-EEEEDSEDDIRSSKDAAALAAKLFGGMAPAHPVSTPP 1691
Query: 403 XXXXXXXXPPXXPXXXPPXPPRXXPXXXXXPXXPXPPXXXXP 528
PP PP PP P P P P P
Sbjct: 1692 VRPQSAA-PPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPP 1732
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 29.9 bits (64), Expect = 0.44
Identities = 15/43 (34%), Positives = 15/43 (34%), Gaps = 1/43 (2%)
Frame = +2
Query: 647 PXPXPXPXXXXXXXXXXXXPXXXPPPP-XXXXXPXPPXXPPXA 772
P P P P P PPPP P PP PP A
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPA 784
Score = 29.5 bits (63), Expect = 0.58
Identities = 12/36 (33%), Positives = 14/36 (38%)
Frame = +3
Query: 666 PPXXXXXXXXXXXPXXLXLPPPPPXXPPPXXPPPXP 773
PP P + +PPP P P PPP P
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPP 768
Score = 27.5 bits (58), Expect = 2.4
Identities = 12/23 (52%), Positives = 12/23 (52%), Gaps = 6/23 (26%)
Frame = +3
Query: 723 PPPPPXXP------PPXXPPPXP 773
PPPPP P PP PPP P
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPPP 783
Score = 27.1 bits (57), Expect = 3.1
Identities = 12/38 (31%), Positives = 12/38 (31%)
Frame = +3
Query: 639 PXPXXXXPXPPXXXXXXXXXXXPXXLXLPPPPPXXPPP 752
P P P P P PPPP PPP
Sbjct: 746 PAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
Score = 26.6 bits (56), Expect = 4.1
Identities = 14/43 (32%), Positives = 14/43 (32%)
Frame = +1
Query: 427 PPXXPXXXPPXPPRXXPXXXXXPXXPXPPXXXXPXXXXVPPPP 555
P P P PP P P P PP PPPP
Sbjct: 742 PTPAPAPIPVPPP--APIMGGPPPPPPPPGVAGAGPPPPPPPP 782
Score = 26.2 bits (55), Expect = 5.4
Identities = 16/53 (30%), Positives = 17/53 (32%), Gaps = 6/53 (11%)
Frame = +3
Query: 633 KXPXPXXXXPXPPXXXXXXXXXXXPXXLXLPPPPPXXPP------PXXPPPXP 773
K P P P P + PPPP PP P PPP P
Sbjct: 730 KSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782
Score = 25.8 bits (54), Expect = 7.2
Identities = 13/47 (27%), Positives = 13/47 (27%)
Frame = +1
Query: 373 PPXXPXXXPXXXXXXXXXPPXXPXXXPPXPPRXXPXXXXXPXXPXPP 513
PP P PP P P PP P P PP
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780
Score = 25.8 bits (54), Expect = 7.2
Identities = 13/54 (24%), Positives = 16/54 (29%)
Frame = +2
Query: 413 PXXXXXPXPPXPXXXXPPAXLXXXXPPXRNPXPPXXXXPXXXXFPPXPXXQKXP 574
P P P PP + PP P PP + P P + P
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAPQAEPEP 803
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 29.5 bits (63), Expect = 0.58
Identities = 17/60 (28%), Positives = 18/60 (30%)
Frame = +1
Query: 376 PXXPXXXPXXXXXXXXXPPXXPXXXPPXPPRXXPXXXXXPXXPXPPXXXXPXXXXVPPPP 555
P P P P P PP P + P P P P VPPPP
Sbjct: 147 PSIPPPSPASAPPIPSKAPPIPSSLPP-PAQPAAPVKSPPSAPSLPSAVPPMPPKVPPPP 205
Score = 26.2 bits (55), Expect = 5.4
Identities = 9/17 (52%), Positives = 9/17 (52%)
Frame = +3
Query: 723 PPPPPXXPPPXXPPPXP 773
PPPPP P P P P
Sbjct: 5 PPPPPPAPAPAAAAPAP 21
Score = 25.8 bits (54), Expect = 7.2
Identities = 20/84 (23%), Positives = 21/84 (25%), Gaps = 2/84 (2%)
Frame = +1
Query: 427 PPXXPXXXPPXPPRXXPXXXXXPXXPXPPXXXXPXXXXVP--PPPXXXKTXXXXTPXXPX 600
PP P PP P P P P +P PP P P
Sbjct: 124 PPSAPA--PPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPV 181
Query: 601 XXXPXHPXXXXXTPXPXPXSPXXP 672
P P P P P P
Sbjct: 182 KSPPSAPSLPSAVPPMPPKVPPPP 205
Score = 25.4 bits (53), Expect = 9.5
Identities = 19/66 (28%), Positives = 19/66 (28%), Gaps = 6/66 (9%)
Frame = +3
Query: 588 PXSXXXXPXXPPXXXKX--PXPXXXXPXP----PXXXXXXXXXXXPXXLXLPPPPPXXPP 749
P S P PP P P P P P P LP P PP
Sbjct: 140 PTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPP 199
Query: 750 PXXPPP 767
PPP
Sbjct: 200 KVPPPP 205
>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 194
Score = 27.9 bits (59), Expect = 1.8
Identities = 16/44 (36%), Positives = 17/44 (38%), Gaps = 1/44 (2%)
Frame = -3
Query: 554 GGGGTXXXXGXXXXGGXGXXGXXXXXGXXRGG-XGGXXXGXXGG 426
G GG+ G GG G G RGG GG G GG
Sbjct: 146 GRGGSRGGFGGNSRGGFGGGSRGGFGGGSRGGSRGGFRGGSRGG 189
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 26.6 bits (56), Expect = 4.1
Identities = 14/42 (33%), Positives = 14/42 (33%)
Frame = -3
Query: 551 GGGTXXXXGXXXXGGXGXXGXXXXXGXXRGGXGGXXXGXXGG 426
GGG G G G G RGG G G GG
Sbjct: 29 GGGRGGARGGGRGGARGGRGGRGGARGGRGGSSGGRGGAKGG 70
Score = 25.4 bits (53), Expect = 9.5
Identities = 16/53 (30%), Positives = 16/53 (30%)
Frame = -1
Query: 766 GGGXXGGGXXGGGGGRXXXXGXXXXXXXXXXXGGXGXXXXGXGXFXXXGGXXG 608
G G GG G GGGR G G G G GG G
Sbjct: 17 GRGGFNGGRGGFGGGRGGARGGGRGGARGGRGGRGGARGGRGGSSGGRGGAKG 69
>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
Y|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1002
Score = 25.8 bits (54), Expect = 7.2
Identities = 24/114 (21%), Positives = 25/114 (21%), Gaps = 5/114 (4%)
Frame = +3
Query: 462 PPPXSXXXXXPXXTXXPXXXPPXXXXXSPPXXXXKNXRXXXXPXSXXXXPXXPPXXXKXP 641
PPP P P PP P PP
Sbjct: 208 PPPPMHHKPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHE 267
Query: 642 XPXXXXPXPPXXXXXXXXXXXPXXLX-----LPPPPPXXPPPXXPPPXPXXXXP 788
P P PP P +PPPP P PP P P
Sbjct: 268 -PGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEP 320
Score = 25.8 bits (54), Expect = 7.2
Identities = 24/114 (21%), Positives = 25/114 (21%), Gaps = 5/114 (4%)
Frame = +3
Query: 462 PPPXSXXXXXPXXTXXPXXXPPXXXXXSPPXXXXKNXRXXXXPXSXXXXPXXPPXXXKXP 641
PPP P P PP P PP
Sbjct: 221 PPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHE 280
Query: 642 XPXXXXPXPPXXXXXXXXXXXPXXLX-----LPPPPPXXPPPXXPPPXPXXXXP 788
P P PP P +PPPP P PP P P
Sbjct: 281 -PGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEP 333
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,479,904
Number of Sequences: 5004
Number of extensions: 22725
Number of successful extensions: 249
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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