Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_T7_K16
         (942 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    37   0.004
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p...    29   0.72 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   6.7  
SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid aminotr...    26   8.8  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 37.1 bits (82), Expect = 0.004
 Identities = 45/195 (23%), Positives = 55/195 (28%), Gaps = 2/195 (1%)
 Frame = +3

Query: 363  TRXPRXTRPRXGXPPPPXXAPXPLARXPXSXXGLDXXFCXXXXTLXAPXPGGXLXXPXGX 542
            ++ P    P    PP P  +  P    P S   +         +   P P      P   
Sbjct: 1019 SKAPPVPLPSADAPPIPVPSTAPPVPIPTSTPPVPKS-SSGAPSAPPPVPAPSSEIPSIP 1077

Query: 543  APXXPRPVXXPXPXXXPPXXXPXPXXLXPSFXCXXFPXXXAXXLXPPQP-PRXXPXXXAP 719
            AP    PV  P P   PP   P P    P       P        PP P P   P    P
Sbjct: 1078 APSGAPPV--PAPSGIPPV--PKPSVAAP-------PVPKPSVAVPPVPAPSGAPPVPKP 1126

Query: 720  XLXXXP-PXPLXXSXXXXXXXQXSSXXXXPXXXXXPTAHFXXPPLXXPXXSSXPXKLPXP 896
             +   P P P                         P      PP+  P     P  +P P
Sbjct: 1127 SVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPP--VPKP 1184

Query: 897  XPXLSPXXPPSDXPP 941
               + P  PPS+ PP
Sbjct: 1185 AAGVPPVPPPSEAPP 1199



 Score = 33.5 bits (73), Expect = 0.044
 Identities = 45/193 (23%), Positives = 53/193 (27%)
 Frame = +3

Query: 363  TRXPRXTRPRXGXPPPPXXAPXPLARXPXSXXGLDXXFCXXXXTLXAPXPGGXLXXPXGX 542
            T  P   +   G P  P   P P +  P                + AP     +  P   
Sbjct: 1047 TSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAP------SGAPPVPAPSGIPPVPKPSVA 1100

Query: 543  APXXPRPVXXPXPXXXPPXXXPXPXXLXPSFXCXXFPXXXAXXLXPPQPPRXXPXXXAPX 722
            AP  P+P     P   P    P P    PS      P        PP P         P 
Sbjct: 1101 APPVPKPSVAVPPVPAPSGAPPVPK---PSVAAPPVPVPSGA---PPVPKPSVAAPPVPA 1154

Query: 723  LXXXPPXPLXXSXXXXXXXQXSSXXXXPXXXXXPTAHFXXPPLXXPXXSSXPXKLPXPXP 902
                PP P             S     P     P A    PP+  P   S    +P P  
Sbjct: 1155 PSGAPPVPKPSVAAPPVPAPSSGIPPVPK----PAA--GVPPVPPP---SEAPPVPKPSV 1205

Query: 903  XLSPXXPPSDXPP 941
             + P  PPS  PP
Sbjct: 1206 GVPPVPPPSTAPP 1218



 Score = 27.9 bits (59), Expect = 2.2
 Identities = 26/116 (22%), Positives = 30/116 (25%)
 Frame = +3

Query: 372  PRXTRPRXGXPPPPXXAPXPLARXPXSXXGLDXXFCXXXXTLXAPXPGGXLXXPXGXAPX 551
            P   +P    PP P  +  P    P                +  P  G     P   AP 
Sbjct: 1140 PPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPP 1199

Query: 552  XPRPVXXPXPXXXPPXXXPXPXXLXPSFXCXXFPXXXAXXLXPPQPPRXXPXXXAP 719
             P+P     P   P    P P    PS      P   A     P P    P    P
Sbjct: 1200 VPKPSVGVPPVPPPSTAPPVP---TPSAGLPPVPVPTAKAPPVPAPSSEAPSVSTP 1252


>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 29.5 bits (63), Expect = 0.72
 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
 Frame = -1

Query: 342 RAPPPP----LRSLISNLSNTCDLTPLPEWSCEQSAW 244
           R+PPP     +RS+   L    D+TP+ +W  ++S W
Sbjct: 99  RSPPPSRERSVRSIEQELEQLRDVTPINQWKRKRSLW 135


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 26/126 (20%), Positives = 30/126 (23%), Gaps = 3/126 (2%)
 Frame = +3

Query: 372 PRXTRPRXGXPPPPXXAPXPLARXPXSXXGLDXXFCXXXXTLXAPXPGGXLXXPXGXAPX 551
           P   + R   PPPP  +     R P                   P        P G A  
Sbjct: 352 PLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASR 411

Query: 552 X---PRPVXXPXPXXXPPXXXPXPXXLXPSFXCXXFPXXXAXXLXPPQPPRXXPXXXAPX 722
               P P     P   PP   P      P       P   +  + PP P         P 
Sbjct: 412 TSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPP 471

Query: 723 LXXXPP 740
               PP
Sbjct: 472 AAPAPP 477


>SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid
           aminotransferase Eca39|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 380

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -1

Query: 333 PPPLRSLISNLSNTCDLTPLPEW 265
           P P+ S    ++N  +L PLPEW
Sbjct: 10  PKPMDSSHIKVTNVKELKPLPEW 32


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,544,998
Number of Sequences: 5004
Number of extensions: 18242
Number of successful extensions: 69
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 479324640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)