Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_T7_K15
         (904 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    33   0.073
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    30   0.39 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    30   0.52 
SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein ...    26   8.4  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 32.7 bits (71), Expect = 0.073
 Identities = 16/54 (29%), Positives = 17/54 (31%)
 Frame = +3

Query: 549  PPPPXPXXRTPPXXXRXQXXXAVXLXXXPXPPXPPQQXXPPXPXXXPXXTXLPP 710
            PP P P    PP          V       PP PP    PP P        +PP
Sbjct: 1159 PPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPP 1212



 Score = 27.9 bits (59), Expect = 2.1
 Identities = 15/49 (30%), Positives = 17/49 (34%)
 Frame = +3

Query: 531  SPXRPXPPPPXPXXRTPPXXXRXQXXXAVXLXXXPXPPXPPQQXXPPXP 677
            +P    PP P P    PP     +    V       PP PP    PP P
Sbjct: 1173 APSSGIPPVPKPAAGVPPVPPPSEAPP-VPKPSVGVPPVPPPSTAPPVP 1220



 Score = 26.6 bits (56), Expect = 4.8
 Identities = 13/41 (31%), Positives = 13/41 (31%)
 Frame = +3

Query: 555  PPXPXXRTPPXXXRXQXXXAVXLXXXPXPPXPPQQXXPPXP 677
            P  P  R PP          V L     PP P     PP P
Sbjct: 1004 PAAPLARVPPVPKLSSKAPPVPLPSADAPPIPVPSTAPPVP 1044


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 30.3 bits (65), Expect = 0.39
 Identities = 17/51 (33%), Positives = 18/51 (35%), Gaps = 2/51 (3%)
 Frame = +3

Query: 543 PXPPPPXPXXRTPPXXXRXQXXXAVXLXXXPXPPXPP--QQXXPPXPXXXP 689
           P PPPP     TP          A  +   P PP PP      PP P   P
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 29.9 bits (64), Expect = 0.52
 Identities = 17/57 (29%), Positives = 20/57 (35%), Gaps = 1/57 (1%)
 Frame = +3

Query: 543 PXPPPPXPXXRTPPXXXRXQXXXAVXLXXXPXPPXPPQQX-XPPXPXXXPXXTXLPP 710
           P P PP      PP         ++ +     PP PP     PP P   P    LPP
Sbjct: 416 PVPTPPSLPPSAPPSLP-PSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPP 471


>SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein
           Lsb1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 296

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 15/51 (29%), Positives = 16/51 (31%), Gaps = 2/51 (3%)
 Frame = +3

Query: 531 SPXRPXPPPPXPXXRTPPXXXRXQXXXAVXLXXXP--XPPXPPQQXXPPXP 677
           S  +  PPPP P    PP                P    P PP Q  P  P
Sbjct: 200 SAVKAQPPPPPPQQNYPPAASSSAPPMQYQQTAYPPQQAPYPPVQAYPQAP 250


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,492,945
Number of Sequences: 5004
Number of extensions: 17701
Number of successful extensions: 63
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 456499320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)