Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP08_T7_K10
(834 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein Ubi3|Schi... 128 1e-30
SPAC589.10c |||ribomal-ubiquitin fusion protein Ubi5|Schizosacch... 128 1e-30
SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein Ubi2|... 77 2e-15
SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein Ubi1|Schiz... 77 2e-15
SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr 2|||M... 77 2e-15
SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like pro... 54 3e-08
SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyc... 34 0.022
SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz... 29 1.1
SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase Ubp6|Schizosacc... 28 1.9
SPAC29B12.06c |rcd1||RNA-binding protein Rcd1 |Schizosaccharomyc... 27 4.3
SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|c... 26 7.6
>SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein
Ubi3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 128 bits (308), Expect = 1e-30
Identities = 66/122 (54%), Positives = 78/122 (63%)
Frame = -1
Query: 507 KLKFKTKRESLPIXQRLIFAGKQLEDGRTLSDYNIQKESTLHLVXXXXXXXXXXXXKNYS 328
K K + K P QRLIFAGKQLEDGRTLSDYNIQKESTLHLV K Y+
Sbjct: 27 KSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKKRKKKTYT 86
Query: 327 TPXXXXXXXXXXKLAVLRFYKVDENGKIHRLRRECTGEQCGAGVFMAVMEDRHYCGKCHS 148
TP +LAVL++YKV+++G + RLRREC CGA FMA +DR YCG+CH
Sbjct: 87 TPKKIKHKHKKVELAVLKYYKVEDDGSVKRLRREC--PNCGASTFMANHKDRLYCGRCHL 144
Query: 147 TM 142
T+
Sbjct: 145 TL 146
Score = 77.4 bits (182), Expect = 2e-15
Identities = 36/40 (90%), Positives = 39/40 (97%)
Frame = -3
Query: 586 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQ 467
MQIFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPP+Q
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQ 40
>SPAC589.10c |||ribomal-ubiquitin fusion protein
Ubi5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 128 bits (308), Expect = 1e-30
Identities = 66/122 (54%), Positives = 78/122 (63%)
Frame = -1
Query: 507 KLKFKTKRESLPIXQRLIFAGKQLEDGRTLSDYNIQKESTLHLVXXXXXXXXXXXXKNYS 328
K K + K P QRLIFAGKQLEDGRTLSDYNIQKESTLHLV K Y+
Sbjct: 27 KSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKKRKKKTYT 86
Query: 327 TPXXXXXXXXXXKLAVLRFYKVDENGKIHRLRRECTGEQCGAGVFMAVMEDRHYCGKCHS 148
TP +LAVL++YKV+++G + RLRREC CGA FMA +DR YCG+CH
Sbjct: 87 TPKKIKHKHKKVELAVLKYYKVEDDGSVKRLRREC--PNCGASTFMANHKDRLYCGRCHL 144
Query: 147 TM 142
T+
Sbjct: 145 TL 146
Score = 77.4 bits (182), Expect = 2e-15
Identities = 36/40 (90%), Positives = 39/40 (97%)
Frame = -3
Query: 586 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQ 467
MQIFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPP+Q
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQ 40
>SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein
Ubi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 77.4 bits (182), Expect = 2e-15
Identities = 36/40 (90%), Positives = 39/40 (97%)
Frame = -3
Query: 586 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQ 467
MQIFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPP+Q
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQ 40
Score = 68.1 bits (159), Expect = 1e-12
Identities = 34/44 (77%), Positives = 35/44 (79%)
Frame = -1
Query: 507 KLKFKTKRESLPIXQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 376
K K + K P QRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 27 KSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70
>SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein
Ubi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 77.4 bits (182), Expect = 2e-15
Identities = 36/40 (90%), Positives = 39/40 (97%)
Frame = -3
Query: 586 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQ 467
MQIFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPP+Q
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQ 40
Score = 68.1 bits (159), Expect = 1e-12
Identities = 34/44 (77%), Positives = 35/44 (79%)
Frame = -1
Query: 507 KLKFKTKRESLPIXQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 376
K K + K P QRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 27 KSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70
>SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 382
Score = 77.4 bits (182), Expect = 2e-15
Identities = 36/40 (90%), Positives = 39/40 (97%)
Frame = -3
Query: 586 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQ 467
MQIFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPP+Q
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQ 40
Score = 77.4 bits (182), Expect = 2e-15
Identities = 36/40 (90%), Positives = 39/40 (97%)
Frame = -3
Query: 586 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQ 467
MQIFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPP+Q
Sbjct: 77 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQ 116
Score = 77.4 bits (182), Expect = 2e-15
Identities = 36/40 (90%), Positives = 39/40 (97%)
Frame = -3
Query: 586 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQ 467
MQIFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPP+Q
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQ 192
Score = 77.4 bits (182), Expect = 2e-15
Identities = 36/40 (90%), Positives = 39/40 (97%)
Frame = -3
Query: 586 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQ 467
MQIFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPP+Q
Sbjct: 229 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQ 268
Score = 77.4 bits (182), Expect = 2e-15
Identities = 36/40 (90%), Positives = 39/40 (97%)
Frame = -3
Query: 586 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQ 467
MQIFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPP+Q
Sbjct: 305 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQ 344
Score = 68.1 bits (159), Expect = 1e-12
Identities = 34/44 (77%), Positives = 35/44 (79%)
Frame = -1
Query: 507 KLKFKTKRESLPIXQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 376
K K + K P QRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 27 KSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70
Score = 68.1 bits (159), Expect = 1e-12
Identities = 34/44 (77%), Positives = 35/44 (79%)
Frame = -1
Query: 507 KLKFKTKRESLPIXQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 376
K K + K P QRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 103 KSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 146
Score = 68.1 bits (159), Expect = 1e-12
Identities = 34/44 (77%), Positives = 35/44 (79%)
Frame = -1
Query: 507 KLKFKTKRESLPIXQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 376
K K + K P QRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 179 KSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 222
Score = 68.1 bits (159), Expect = 1e-12
Identities = 34/44 (77%), Positives = 35/44 (79%)
Frame = -1
Query: 507 KLKFKTKRESLPIXQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 376
K K + K P QRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 255 KSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 298
Score = 68.1 bits (159), Expect = 1e-12
Identities = 34/44 (77%), Positives = 35/44 (79%)
Frame = -1
Query: 507 KLKFKTKRESLPIXQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 376
K K + K P QRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 331 KSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 374
>SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like
protein modifier Ned8|Schizosaccharomyces pombe|chr
2|||Manual
Length = 78
Score = 53.6 bits (123), Expect = 3e-08
Identities = 21/40 (52%), Positives = 32/40 (80%)
Frame = -3
Query: 586 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQ 467
M I VKTLTGK I L+++P+D + +K ++++KEGIPP+Q
Sbjct: 1 MLIKVKTLTGKEIELDIDPNDKVSRIKERVEEKEGIPPSQ 40
Score = 38.3 bits (85), Expect = 0.001
Identities = 18/44 (40%), Positives = 26/44 (59%)
Frame = -1
Query: 507 KLKFKTKRESLPIXQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 376
K + + K P QRLI+AGKQ+ D + Y+++ S LHLV
Sbjct: 27 KERVEEKEGIPPSQQRLIYAGKQMADDKNAESYHLEGGSVLHLV 70
>SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 354
Score = 34.3 bits (75), Expect = 0.022
Identities = 15/30 (50%), Positives = 21/30 (70%)
Frame = -1
Query: 465 QRLIFAGKQLEDGRTLSDYNIQKESTLHLV 376
QRLI+AG+ L+D +L Y IQ ++HLV
Sbjct: 44 QRLIYAGRVLKDEESLKTYKIQDGHSIHLV 73
>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 873
Score = 28.7 bits (61), Expect = 1.1
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +1
Query: 64 NPSYTAVASVPYRLEGTYLFVVVFEDHRAVTLPAV 168
NP+YT Y L TYL F++HR + AV
Sbjct: 144 NPAYTNSHQNSYSLNETYLSYDFFDNHRGASSSAV 178
>SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase
Ubp6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 467
Score = 27.9 bits (59), Expect = 1.9
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = -3
Query: 559 GKTITLEVEPSDTIENVKAKIQDKEGIPPNQXEV 458
GK LE+EP++T +K ++ +PP + +V
Sbjct: 10 GKKYDLEIEPNETGSTLKHQLYSLTQVPPERQKV 43
>SPAC29B12.06c |rcd1||RNA-binding protein Rcd1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 283
Score = 26.6 bits (56), Expect = 4.3
Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Frame = -1
Query: 282 VLRFY-KVDENGKIHRLRRECTGEQCGAGVFMAVMEDRHYCGKCHSTMVFKDDD 124
V+R Y ++ +N + R C E F V++D H KC + ++ D
Sbjct: 224 VIRCYLRLSDNPRAREALRHCLPEPLRDATFAQVLKDDHNTKKCLAQLLINLSD 277
>SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 577
Score = 25.8 bits (54), Expect = 7.6
Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Frame = -3
Query: 577 FVKTLTGKTITLEVEPSDTIE--NVKAKIQDKEGIPPNQXEVDLR 449
F LT T T+E EP+ TI+ ++A++ +K G +Q E+D +
Sbjct: 22 FEDALTFITKTIEQEPNPTIDLFELRAQVYEKSG-QYSQAELDAK 65
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,515,829
Number of Sequences: 5004
Number of extensions: 44415
Number of successful extensions: 108
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 410448950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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