Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_T7_K09
         (775 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0407 - 24983491-24983575,24983655-24984015,24984367-249844...   170   1e-42
01_03_0217 + 13879259-13879270,13880322-13880683,13880771-13880855    168   5e-42
07_01_0566 + 4207894-4207974,4208090-4208144,4208671-4208759,420...    29   5.4  
03_02_0557 + 9450212-9450346,9450553-9450633,9450768-9451114,945...    28   9.5  

>04_04_0407 -
           24983491-24983575,24983655-24984015,24984367-24984406,
           24984466-24984468
          Length = 162

 Score =  170 bits (413), Expect = 1e-42
 Identities = 84/133 (63%), Positives = 95/133 (71%)
 Frame = -2

Query: 501 AQRKVVKGEHGKRVRKIXNXVHFRRPKTFEPPRHPKYPRKXLPKRNRMDAYNIIKFPXTX 322
           A + V  G   K  +KI   V F RPKT +  R PKYPR   P RN++D Y I+K+P T 
Sbjct: 30  AAKAVKSGTAKKTTKKIRTSVTFHRPKTLKKSRDPKYPRVSTPGRNKLDQYQILKYPLTT 89

Query: 321 EAAMKKIEDNNTLVFIVHTSANKHHIKAAVKKLYDINVGKVNTXIRPDGKKKAYVRLARD 142
           E+AMKKIEDNNTLVFIV   A+K  IKAAVKK+YDI   KVNT IRPDGKKKAYV+L  D
Sbjct: 90  ESAMKKIEDNNTLVFIVDLKADKKKIKAAVKKMYDIQAKKVNTLIRPDGKKKAYVKLTPD 149

Query: 141 YDALDVAXKIGII 103
           YDALDVA KIGII
Sbjct: 150 YDALDVANKIGII 162


>01_03_0217 + 13879259-13879270,13880322-13880683,13880771-13880855
          Length = 152

 Score =  168 bits (408), Expect = 5e-42
 Identities = 84/131 (64%), Positives = 96/131 (73%), Gaps = 1/131 (0%)
 Frame = -2

Query: 492 KVVK-GEHGKRVRKIXNXVHFRRPKTFEPPRHPKYPRKXLPKRNRMDAYNIIKFPXTXEA 316
           K VK G   ++ +KI   V F RPKT +  R PKYPR   P RN++D Y I+K+P T E+
Sbjct: 22  KAVKSGSIKRKSKKIRTSVTFHRPKTLKKARDPKYPRVSAPGRNKLDQYQILKYPLTTES 81

Query: 315 AMKKIEDNNTLVFIVHTSANKHHIKAAVKKLYDINVGKVNTXIRPDGKKKAYVRLARDYD 136
           AMKKIEDNNTLVFIV   A+K  IKAAVKK+YDI   KVNT IRPDGKKKAYV+L  DYD
Sbjct: 82  AMKKIEDNNTLVFIVDLKADKKKIKAAVKKMYDIQAKKVNTLIRPDGKKKAYVKLTPDYD 141

Query: 135 ALDVAXKIGII 103
           ALDVA KIGII
Sbjct: 142 ALDVANKIGII 152


>07_01_0566 +
           4207894-4207974,4208090-4208144,4208671-4208759,
           4209742-4209794,4209966-4210120,4210201-4210528,
           4210618-4210730,4211394-4211538,4211951-4212259,
           4212340-4212420,4212989-4213349
          Length = 589

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = -2

Query: 486 VKGEHGKRVRKIX-NXVHFRRPKTFEPPRHPKYPRKXLPKRNRMDAYN 346
           +KGE  K++R+   N    +R KT +PP H K  +K   K    D+Y+
Sbjct: 140 LKGEKEKKLRRTEDNSAAEKRVKTQKPPTHDKQKKKR--KHYSSDSYS 185


>03_02_0557 +
           9450212-9450346,9450553-9450633,9450768-9451114,
           9451345-9451945,9452206-9452239,9452514-9452577,
           9452909-9453325,9453439-9453523,9453773-9453831,
           9453931-9454043,9456407-9456509,9456597-9456654,
           9456781-9456834,9456922-9457131,9457254-9457312,
           9457436-9457495,9457709-9457802,9458366-9458506,
           9458562-9458741
          Length = 964

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
 Frame = -3

Query: 317 QQ*RRLKITTPWX--LLFTQVQTSTISRLQSRNXMI*MLVKSTLSSGLMVRRKRTYDSLE 144
           +Q R   +  PW   +L T      ++  + R   I   V+  LS+GL+   + TY   E
Sbjct: 329 EQTRNPVLEQPWDSSMLITAPVKVRVTETKYRPESILKDVRGLLSTGLLEGFRVTYKKNE 388

Query: 143 IMTHWTLPTKSASYKL 96
           IM        SAS++L
Sbjct: 389 IMNACEFEQHSASFQL 404


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,875,993
Number of Sequences: 37544
Number of extensions: 209999
Number of successful extensions: 459
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 448
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 459
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)