Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_T7_K08
         (772 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC9B6.11c |||CCR4/nocturin family endoribonuclease|Schizosacch...    33   0.060
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    31   0.14 
SPAC2C4.11c |rbp28||RNA-binding protein Rbp28|Schizosaccharomyce...    28   1.3  
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar...    27   2.2  
SPCC4G3.07c |phf1|swp1, saf50|PHD finger containing protein Phf1...    27   3.0  
SPAC17G8.12 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   5.2  
SPAC22H10.05c |||mRNA cleavage and polyadenylation specificity f...    26   6.9  
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   9.1  
SPBC9B6.06 |mrpl10||mitochondrial ribosomal protein subunit L15|...    25   9.1  

>SPBC9B6.11c |||CCR4/nocturin family
           endoribonuclease|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 502

 Score = 32.7 bits (71), Expect = 0.060
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = +3

Query: 93  PERKKGRREGPRSFTSPNFSQETTPXKKAREALAPXERLPTKPHRAPP 236
           P +KKG  +GP SF +P + ++    K  + A     +    P  APP
Sbjct: 45  PVKKKGSAKGPPSFVTPEYIEKQRQKKLEKMAKKAARKPIAPPSNAPP 92


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 31.5 bits (68), Expect = 0.14
 Identities = 40/186 (21%), Positives = 60/186 (32%), Gaps = 6/186 (3%)
 Frame = +3

Query: 81   TPAPPERKKGRREGPRSFTSPNFSQETTPXKKAREALAPXERLPTKPH---RAPPHRLHE 251
            TP  P+   G    P    +P+    + P       +     +P  P     APP     
Sbjct: 1049 TPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPS 1108

Query: 252  TYGTAMRAESLALGGTRTDVKTGFHPRENPVEPRLGRHTVSGAQEPPCTASPPDQRPSAR 431
                 + A S A    +  V     P  +   P + + +V+    P  + +PP  +PS  
Sbjct: 1109 VAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPP-VPKPSVAAPPVPAPSGAPPVPKPSVA 1167

Query: 432  APPXPGTXXXXXXXXXXXXHAPSTPPSALRSRXGIPFP---FALLXLTKRHDQVTEPNHG 602
            APP P                P  PP +      +P P      +        V  P+ G
Sbjct: 1168 APPVPAPSSGIPPVPKPAAGVPPVPPPS--EAPPVPKPSVGVPPVPPPSTAPPVPTPSAG 1225

Query: 603  LPRTPV 620
            LP  PV
Sbjct: 1226 LPPVPV 1231



 Score = 26.2 bits (55), Expect = 5.2
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +3

Query: 327  PRENPVEPRLGRHTVSGAQEPPCTASPPDQRPSARAPPXP 446
            P+++P    L +  VS +   P    PP  + S++APP P
Sbjct: 987  PKDHPPSAPLSK-PVSTSPAAPLARVPPVPKLSSKAPPVP 1025


>SPAC2C4.11c |rbp28||RNA-binding protein Rbp28|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 258

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +3

Query: 138 SPNFSQETTPXKKAREALAPXERLPTKPHRAPPHR 242
           +P F+   T  +K R A     R+P  PHR  P R
Sbjct: 61  APKFAPAKTSAEKKRGAKPQMRRVPIPPHRMTPLR 95


>SPAC9G1.10c |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1191

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 39/141 (27%), Positives = 55/141 (39%), Gaps = 21/141 (14%)
 Frame = +3

Query: 87  APPERKKGRR--EGPRSFTSPNFSQETT--PXKKAREALA---PXERLPTKPHRAPPHRL 245
           APP    G R  E P    SP   Q       +++R  ++   P    P KP + PP R 
Sbjct: 255 APPVLNIGDRSLETPPPIPSPRPPQPVAVEAIQQSRAVISQQLPLHVSPRKPPK-PPLRK 313

Query: 246 HETYGTAMRAESLA-------LGGTRTDVKTGFHPREN----PVEPRLG---RHTVSGAQ 383
             T  ++   E+LA       + G ++   T   P       P +PRL     HT+S   
Sbjct: 314 VSTQRSSSPIENLATKSDASLVTGLQSSPYTHIAPASEMSLIPEKPRLPPRPSHTLSELS 373

Query: 384 EPPCTASPPDQRPSARAPPXP 446
            P  T+     +PS   PP P
Sbjct: 374 SPALTSENLSSKPSPLFPPPP 394


>SPCC4G3.07c |phf1|swp1, saf50|PHD finger containing protein
           Phf1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 461

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 3/64 (4%)
 Frame = +3

Query: 243 LHETYGTAMRAESLALGGTRTDVK---TGFHPRENPVEPRLGRHTVSGAQEPPCTASPPD 413
           + ET  +   A  +A G   +DV      FH  +  V+   G  T+  +     T+ PP+
Sbjct: 40  VRETDSSNFDASPVASGSGISDVGPFGADFHQLQQHVQTPYGGMTMPASSSSGATSVPPE 99

Query: 414 QRPS 425
           Q PS
Sbjct: 100 QDPS 103


>SPAC17G8.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 608

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = +3

Query: 132 FTSPNF-SQETTPXKKAREALAPXERLPTKPHRAPPHRLHE 251
           F S  F +++TT   KA++ L     +PTKPH+A   ++++
Sbjct: 467 FESLRFENRKTTSKPKAKKTLVTS--IPTKPHQASVEKVYD 505


>SPAC22H10.05c |||mRNA cleavage and polyadenylation specificity
           factor complex subunit |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 456

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 585 TEPNHGLPRTPVLYHTGDDSP 647
           T P H L + P++Y+ G DSP
Sbjct: 178 TGPTHVLAKVPLVYNFGLDSP 198


>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 262

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
 Frame = +3

Query: 54  GG*RTGLCRTPAPPERKKGRREGPR-SFTSPNFSQETTPXKKAREALAPXERLPTKPHRA 230
           GG  TG   TP       G ++  + S++ P++SQ + P K+          LP++P   
Sbjct: 72  GGSSTG--STPRTASPAVGNQDYSKPSYSQPSYSQPSQPPKEPALPSRGTPSLPSRPGSR 129

Query: 231 P 233
           P
Sbjct: 130 P 130


>SPBC9B6.06 |mrpl10||mitochondrial ribosomal protein subunit
           L15|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 220

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 14/48 (29%), Positives = 23/48 (47%)
 Frame = +3

Query: 78  RTPAPPERKKGRREGPRSFTSPNFSQETTPXKKAREALAPXERLPTKP 221
           RTP  P     +++  R +T+P+F+      K  RE     +R P +P
Sbjct: 169 RTPPRPPLPVSKKD-IRYYTNPHFAGYLANVKNIRELYYGDQRFPYEP 215


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,752,447
Number of Sequences: 5004
Number of extensions: 52052
Number of successful extensions: 170
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)