Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP08_T7_K07
(825 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL117204-23|CAB55137.1| 285|Caenorhabditis elegans Hypothetical... 34 0.14
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 32 0.57
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 32 0.57
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 32 0.57
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 30 1.7
AC006638-2|AAK85481.1| 1256|Caenorhabditis elegans Cyclase assoc... 25 3.4
AC006638-1|AAK85482.1| 495|Caenorhabditis elegans Cyclase assoc... 25 3.6
U58755-7|AAB00696.1| 136|Caenorhabditis elegans Hypothetical pr... 29 5.3
AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical ... 28 7.1
>AL117204-23|CAB55137.1| 285|Caenorhabditis elegans Hypothetical
protein Y116A8C.35 protein.
Length = 285
Score = 33.9 bits (74), Expect = 0.14
Identities = 16/35 (45%), Positives = 16/35 (45%)
Frame = -3
Query: 820 GXGWGXGXGSRXXXCXXXXXRGGGRXXXGVGGGVG 716
G GWG G G R GGGR G GGG G
Sbjct: 230 GGGWGGGGGGRDRDRGGWGGGGGGRGYGGGGGGGG 264
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 31.9 bits (69), Expect = 0.57
Identities = 15/43 (34%), Positives = 15/43 (34%)
Frame = +1
Query: 511 PPPXQLXXXXAXXXAPRXPXHXXXFPPPPXPPNXVXXGXTPXP 639
PPP L P P PPPP PP G P P
Sbjct: 746 PPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPP 788
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 31.9 bits (69), Expect = 0.57
Identities = 15/43 (34%), Positives = 15/43 (34%)
Frame = +1
Query: 511 PPPXQLXXXXAXXXAPRXPXHXXXFPPPPXPPNXVXXGXTPXP 639
PPP L P P PPPP PP G P P
Sbjct: 746 PPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPP 788
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 31.9 bits (69), Expect = 0.57
Identities = 15/43 (34%), Positives = 15/43 (34%)
Frame = +1
Query: 511 PPPXQLXXXXAXXXAPRXPXHXXXFPPPPXPPNXVXXGXTPXP 639
PPP L P P PPPP PP G P P
Sbjct: 329 PPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPP 371
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical
protein R04E5.8a protein.
Length = 997
Score = 30.3 bits (65), Expect = 1.7
Identities = 20/59 (33%), Positives = 21/59 (35%), Gaps = 1/59 (1%)
Frame = +3
Query: 585 STPPPXPKXCXRXIXPXSTSXTXXCXIPLXXXXXPYPXXXXSSXP-TPPPTPXXXLPPP 758
S PPP P R P S P P P S P PP TP +PPP
Sbjct: 137 SPPPPPPPRVPRTPPPRSPPPRRPPMTPPSPQRRP-PRTPPSPEPRNPPRTPPSPIPPP 194
>AC006638-2|AAK85481.1| 1256|Caenorhabditis elegans Cyclase associated
protein homologprotein 1, isoform a protein.
Length = 1256
Score = 24.6 bits (51), Expect(2) = 3.4
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = +1
Query: 541 AXXXAPRXPXHXXXFPPPPXPP 606
A AP+ P PPPP PP
Sbjct: 998 AAPSAPKAPAGPGGPPPPPPPP 1019
Score = 23.0 bits (47), Expect(2) = 3.4
Identities = 8/18 (44%), Positives = 8/18 (44%)
Frame = +1
Query: 586 PPPPXPPNXVXXGXTPXP 639
PPPP PP P P
Sbjct: 1014 PPPPPPPADFFANIAPPP 1031
>AC006638-1|AAK85482.1| 495|Caenorhabditis elegans Cyclase
associated protein homologprotein 1, isoform b protein.
Length = 495
Score = 24.6 bits (51), Expect(2) = 3.6
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = +1
Query: 541 AXXXAPRXPXHXXXFPPPPXPP 606
A AP+ P PPPP PP
Sbjct: 237 AAPSAPKAPAGPGGPPPPPPPP 258
Score = 23.0 bits (47), Expect(2) = 3.6
Identities = 8/18 (44%), Positives = 8/18 (44%)
Frame = +1
Query: 586 PPPPXPPNXVXXGXTPXP 639
PPPP PP P P
Sbjct: 253 PPPPPPPADFFANIAPPP 270
>U58755-7|AAB00696.1| 136|Caenorhabditis elegans Hypothetical
protein C34D4.11 protein.
Length = 136
Score = 28.7 bits (61), Expect = 5.3
Identities = 14/36 (38%), Positives = 14/36 (38%)
Frame = -3
Query: 823 RGXGWGXGXGSRXXXCXXXXXRGGGRXXXGVGGGVG 716
RG GWG G GGG G GGG G
Sbjct: 68 RGGGWGNNGGGGNWGGNGGGGNGGGGRGGGGGGGGG 103
>AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical
protein Y48G9A.4 protein.
Length = 1115
Score = 28.3 bits (60), Expect = 7.1
Identities = 11/28 (39%), Positives = 13/28 (46%)
Frame = +1
Query: 556 PRXPXHXXXFPPPPXPPNXVXXGXTPXP 639
P P + PPPP PP + G P P
Sbjct: 566 PPLPQNLSGAPPPPPPPPPMLGGPPPPP 593
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,090,265
Number of Sequences: 27780
Number of extensions: 154458
Number of successful extensions: 1410
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 625
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1231
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2040452812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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