Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP08_T7_K05
(827 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein ... 28 1.4
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual 28 1.9
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 27 2.5
SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6 |Schizosacc... 27 3.2
SPBC32C12.02 |ste11|aff1, stex|transcription factor Ste11|Schizo... 27 3.2
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar... 27 3.2
SPAC1250.03 |ubc14||ubiquitin conjugating enzyme Ubc14|Schizosac... 26 5.7
SPAC458.03 |||nuclear telomere cap complex subunit |Schizosaccha... 26 7.5
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch... 25 9.9
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T... 25 9.9
SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe... 25 9.9
>SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 570
Score = 28.3 bits (60), Expect = 1.4
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +1
Query: 100 RNMARIYQLAVDLGGRERSLNRCREKSSFVVLKNRPDVVVQYG 228
R +A Y+ + LGG++ S+ EK F + N DV+ + G
Sbjct: 112 RALADKYKHVLVLGGKDNSVRETAEKYGFKSVINELDVIAKLG 154
>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1496
Score = 27.9 bits (59), Expect = 1.9
Identities = 20/63 (31%), Positives = 29/63 (46%)
Frame = -2
Query: 682 TSTRSSNPXFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAPSAYLTPSSLGMAKG 503
T T S+NP T I N + K F+ PP++++ P +L P+S AK
Sbjct: 687 TVTTSANPLGFKSTIQRPIPIKNNEDSDSCKAFSQA--PPIATKKPPTFLKPNSPEYAKT 744
Query: 502 VSP 494
V P
Sbjct: 745 VIP 747
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 27.5 bits (58), Expect = 2.5
Identities = 20/81 (24%), Positives = 33/81 (40%), Gaps = 4/81 (4%)
Frame = -2
Query: 721 SPXASTTXPXXSXTSTRSSNPXFHTP----TTPDLTSISINPLTPY*KEFAPGLKPPLSS 554
S +++ P S T+ +S P + +TP +S ++N TP P++S
Sbjct: 1575 SSVVNSSTPITSSTALNTSTPITSSSVLNSSTPITSSTALNTSTPITSSSVLNSSTPITS 1634
Query: 553 EAPSAYLTPSSLGMAKGVSPP 491
TP + A SPP
Sbjct: 1635 STVLNSSTPITSSTALNTSPP 1655
Score = 26.2 bits (55), Expect = 5.7
Identities = 20/81 (24%), Positives = 32/81 (39%), Gaps = 4/81 (4%)
Frame = -2
Query: 721 SPXASTTXPXXSXTSTRSSNPXFHTP----TTPDLTSISINPLTPY*KEFAPGLKPPLSS 554
S +++ P S T+ +S P + +TP +S +N TP A PP++S
Sbjct: 1599 SSVLNSSTPITSSTALNTSTPITSSSVLNSSTPITSSTVLNSSTPITSSTALNTSPPITS 1658
Query: 553 EAPSAYLTPSSLGMAKGVSPP 491
TP + S P
Sbjct: 1659 STVVNSSTPITSSTVVNTSTP 1679
>SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 745
Score = 27.1 bits (57), Expect = 3.2
Identities = 10/32 (31%), Positives = 20/32 (62%)
Frame = -3
Query: 255 CYFSTPPFDTVLYDNIRTVLKDNKTALLSASI 160
CY P + + L ++I+T+L DN ++ A++
Sbjct: 168 CYSLDPSYKSQLEEHIKTLLSDNSPIVVPAAL 199
>SPBC32C12.02 |ste11|aff1, stex|transcription factor
Ste11|Schizosaccharomyces pombe|chr 2|||Manual
Length = 468
Score = 27.1 bits (57), Expect = 3.2
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 6/70 (8%)
Frame = -2
Query: 724 VSPXASTTXPXXSXTSTRSS-NPXFHTPTTPDLTSISINPLTP-----Y*KEFAPGLKPP 563
VS +++ P S S +P P+TP + SI+P TP Y + A L P
Sbjct: 276 VSEQSNSDSPELSADKVLSHCSPIDARPSTPSCPNASISPKTPNTGDHYGFDGAEYLGTP 335
Query: 562 LSSEAPSAYL 533
LS + +AYL
Sbjct: 336 LSVGSTTAYL 345
>SPAC9G1.10c |||inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1191
Score = 27.1 bits (57), Expect = 3.2
Identities = 25/91 (27%), Positives = 38/91 (41%)
Frame = -2
Query: 724 VSPXASTTXPXXSXTSTRSSNPXFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAP 545
VSP P ++ RSS+P + T D + ++ +PY AP + L E P
Sbjct: 301 VSPRKPPKPPLRKVSTQRSSSPIENLATKSDASLVTGLQSSPY-THIAPASEMSLIPEKP 359
Query: 544 SAYLTPSSLGMAKGVSPPYFQVNDESQASRL 452
PS +++ SP N S+ S L
Sbjct: 360 RLPPRPSHT-LSELSSPALTSENLSSKPSPL 389
>SPAC1250.03 |ubc14||ubiquitin conjugating enzyme
Ubc14|Schizosaccharomyces pombe|chr 1|||Manual
Length = 155
Score = 26.2 bits (55), Expect = 5.7
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -3
Query: 465 KLRALLVVIPRILRSPPPTHPLIEDV 388
KLR++L I ++LR P P PL+ +
Sbjct: 105 KLRSVLEQILQLLREPNPDDPLVASI 130
>SPAC458.03 |||nuclear telomere cap complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 868
Score = 25.8 bits (54), Expect = 7.5
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -2
Query: 142 LRDLPPVGRSSPCFFRLLWSLRKILIPYSSQFW 44
L++L +G SPC RL L +++P FW
Sbjct: 21 LKELQHIGVPSPCNLRLYHELISVIVP---TFW 50
>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
Eme1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 25.4 bits (53), Expect = 9.9
Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Frame = -2
Query: 655 FHTPTTPDLTSISINPLTP-Y*KEFAPGLKPPLSSEAPSAYLTPSSLGMAKGVSPPYFQV 479
FHTPT P T +S +P + + PLS +A S LT S L + SPP V
Sbjct: 139 FHTPTIPRTTQLSSKTSSPIVIPDDNEQVASPLSKKAAS--LTSSPLKDFQS-SPPLSTV 195
Query: 478 NDESQA 461
+S +
Sbjct: 196 LQKSHS 201
>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 988
Score = 25.4 bits (53), Expect = 9.9
Identities = 19/78 (24%), Positives = 33/78 (42%)
Frame = -3
Query: 354 KVKIADNNLATHKELALKVSSIIGTRVYVFDPSCYFSTPPFDTVLYDNIRTVLKDNKTAL 175
K K+ D K + +S T+ +V + YF PF+ V+ +K + T
Sbjct: 608 KKKLKDPEFVIRKYATIHATSDRATKNFVSEAFSYFDMVPFEKVVQ---LLSMKTSDTLF 664
Query: 174 LSASIQASLPSSEIYRQL 121
+ + SSEI++ L
Sbjct: 665 VDFVDYWTKSSSEIFKML 682
>SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 488
Score = 25.4 bits (53), Expect = 9.9
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = +1
Query: 115 IYQLAVDLGGRERSLNRCREKSSFVVLKNRPDVV 216
++Q A+ LG RS RC KSSF+ + DVV
Sbjct: 33 LHQQAL-LGRNGRSSKRCSPKSSFIRNSPKIDVV 65
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,819,429
Number of Sequences: 5004
Number of extensions: 55394
Number of successful extensions: 232
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 232
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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