Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP08_T7_K05
(827 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,287... 35 0.069
08_01_0364 - 3218309-3218414,3218882-3218941,3219898-3219969,322... 35 0.091
06_01_1069 + 8731567-8731632,8732120-8732281,8733028-8733081,873... 29 3.4
02_05_0158 - 26362259-26362695,26363732-26363903 29 3.4
12_01_0302 - 2286171-2286341,2286747-2286968 29 4.5
09_04_0737 - 19822822-19822973,19823069-19823135,19823666-198238... 29 6.0
02_05_0640 - 30558523-30559027,30559123-30559252,30559388-305598... 29 6.0
>05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,
2879715-2879973,2880060-2880346,2880423-2880758,
2880862-2881003,2881077-2881297,2881379-2881540,
2881617-2881775,2881860-2882159,2882834-2883097,
2883133-2883243,2883902-2883988
Length = 1871
Score = 35.1 bits (77), Expect = 0.069
Identities = 26/81 (32%), Positives = 34/81 (41%), Gaps = 3/81 (3%)
Frame = -2
Query: 721 SPXASTTXPXXSXTS-TRSSNPXFHTPTTPDL--TSISINPLTPY*KEFAPGLKPPLSSE 551
SP S T P S TS + S ++PT+P TS +P +P +P P
Sbjct: 1756 SPSYSPTSPSYSPTSPSYSPTSSAYSPTSPAYSPTSPGYSPTSPSYSPSSPSYNPSSVKY 1815
Query: 550 APSAYLTPSSLGMAKGVSPPY 488
PS +PSS SP Y
Sbjct: 1816 TPSHAYSPSSPNYYSSTSPTY 1836
>08_01_0364 - 3218309-3218414,3218882-3218941,3219898-3219969,
3220080-3223195,3223303-3223561,3223665-3223951,
3224029-3224364,3224463-3224604,3224690-3224910,
3224990-3225151,3225242-3225400,3225488-3225787,
3226306-3226569,3227370-3227453
Length = 1855
Score = 34.7 bits (76), Expect = 0.091
Identities = 28/83 (33%), Positives = 38/83 (45%), Gaps = 5/83 (6%)
Frame = -2
Query: 721 SPXASTTXPXXSXTS-TRSSNPXFHTPTTPDL--TSISINPLTPY*KEFAPGLKPPLSSE 551
SP S T P S TS + S ++PT+P TS S +P +P +P P +
Sbjct: 1694 SPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPNYSPTSPSYNPSSAKY 1753
Query: 550 APSAYLTPSS--LGMAKGVSPPY 488
+PS +PSS L SP Y
Sbjct: 1754 SPSHAYSPSSPRLSPYSQTSPNY 1776
>06_01_1069 +
8731567-8731632,8732120-8732281,8733028-8733081,
8733557-8733630,8733706-8733786,8734902-8735079,
8735336-8735506,8736113-8736202,8736284-8736331,
8736447-8736562,8736655-8736733,8737101-8737223
Length = 413
Score = 29.5 bits (63), Expect = 3.4
Identities = 28/89 (31%), Positives = 42/89 (47%), Gaps = 7/89 (7%)
Frame = -2
Query: 688 SXTSTRSSNPXFHT-PTTPDLTSISINP------LTPY*KEFAPGLKPPLSSEAPSAYLT 530
S ST S P + P TP + S++ P +TP + P +PP++S P+A T
Sbjct: 82 SGASTASKAPVSQSQPATP-VASVARTPPPQAPVVTP--EPAPPSAQPPVASATPAAAAT 138
Query: 529 PSSLGMAKGVSPPYFQVNDESQASRLISG 443
P++ A + Y Q AS L+SG
Sbjct: 139 PAAAVTASSDADVYSQA-----ASNLVSG 162
>02_05_0158 - 26362259-26362695,26363732-26363903
Length = 202
Score = 29.5 bits (63), Expect = 3.4
Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = -2
Query: 721 SPXASTTXPXXSXTSTRSSNPXFHTP-TTPDLTS 623
+P AS++ P + +T SS+P TP +TPD T+
Sbjct: 131 TPTASSSPPSTATPATPSSDPGMDTPSSTPDATT 164
>12_01_0302 - 2286171-2286341,2286747-2286968
Length = 130
Score = 29.1 bits (62), Expect = 4.5
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +3
Query: 81 RLQRSRKKHGEDLPTGGRSRRKGEKLE*MQREEQ 182
RL+R RK + D+ G + +GEKLE + +E+
Sbjct: 57 RLERLRKGYARDVRAAGAMKVRGEKLENWREKEK 90
>09_04_0737 -
19822822-19822973,19823069-19823135,19823666-19823822,
19824003-19824177,19824364-19824481,19824676-19824874,
19824983-19825062,19825141-19825257,19825791-19825961,
19826121-19826597
Length = 570
Score = 28.7 bits (61), Expect = 6.0
Identities = 18/49 (36%), Positives = 25/49 (51%)
Frame = +1
Query: 73 FYVDSKGVGRNMARIYQLAVDLGGRERSLNRCREKSSFVVLKNRPDVVV 219
F+VD G G + ++++LAV+ G R CR VV DVVV
Sbjct: 93 FHVDPTGDGSSFLQLHRLAVE-GTRRLLAACCRSGVRTVVYTGSADVVV 140
>02_05_0640 - 30558523-30559027,30559123-30559252,30559388-30559868,
30560292-30560346,30560537-30560613,30561228-30561315,
30561490-30561593,30562050-30562231,30562347-30563109,
30563195-30563438,30564513-30564658,30565158-30565283,
30565404-30565517,30565595-30565762,30566283-30566528,
30566605-30566767,30566970-30567064,30567274-30567357,
30567769-30568055,30568359-30568572,30568923-30569140,
30569386-30569623,30570312-30571118,30571202-30571301,
30571694-30571737,30571824-30571973
Length = 1942
Score = 28.7 bits (61), Expect = 6.0
Identities = 20/65 (30%), Positives = 30/65 (46%)
Frame = -3
Query: 240 PPFDTVLYDNIRTVLKDNKTALLSASIQASLPSSEIYRQLVDPRHVSSDSFGVYVKS*SL 61
P F T+LY ++KD S+ L S+ Y L+DP S D+ + +
Sbjct: 1349 PEFHTLLYAEAARIIKDCWWLADSSRPVKELDSAVGYA-LLDPTWASQDNTSTAIGNIVA 1407
Query: 60 ILHSF 46
+LHSF
Sbjct: 1408 LLHSF 1412
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,490,040
Number of Sequences: 37544
Number of extensions: 410991
Number of successful extensions: 1186
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1182
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2279943096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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