Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_T7_K05
         (827 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U51998-5|AAL00856.2|  648|Caenorhabditis elegans Hypothetical pr...    31   1.0  
U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resist...    30   1.8  
M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.ele...    30   1.8  
U51998-6|ABS83845.1|  825|Caenorhabditis elegans Hypothetical pr...    29   3.1  
AL033536-4|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical ...    28   7.1  
AL117195-31|CAN99709.1| 1459|Caenorhabditis elegans Hypothetical...    28   9.4  
AL117195-30|CAB60772.3| 1456|Caenorhabditis elegans Hypothetical...    28   9.4  

>U51998-5|AAL00856.2|  648|Caenorhabditis elegans Hypothetical
           protein C12D12.1b protein.
          Length = 648

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
 Frame = -2

Query: 709 STTXPXXSXTSTRSSNPXFHTPTTPDLTSISINPLTP--Y*KEFAPGLKPPLSSEAPSAY 536
           +T  P  + T+T  +NP   TPTT  + +I  +P  P          + P  S+ AP+A 
Sbjct: 488 TTPTPVPTTTNTPPANPTTATPTT--VGTIGTSPTAPANLTTPTTAPVNPTSSTTAPTAP 545

Query: 535 LTPSSLGMAKGVSP 494
           + P+S   A  V P
Sbjct: 546 VNPTSPTTAPTVPP 559


>U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resistant
            protein 1 protein.
          Length = 1852

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 26/81 (32%), Positives = 34/81 (41%), Gaps = 2/81 (2%)
 Frame = -2

Query: 724  VSPXASTTXPXXSXTSTRSSNPXFHTPTTPDL--TSISINPLTPY*KEFAPGLKPPLSSE 551
            VSP  S T P  S TS        ++PT+P    TS S +P +P     +P   P   S 
Sbjct: 1608 VSPSYSPTSPSYSPTSPS------YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSY 1661

Query: 550  APSAYLTPSSLGMAKGVSPPY 488
            +PS+     S       SP Y
Sbjct: 1662 SPSSPSYSPSSPRYSPTSPTY 1682


>M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.elegans
            RNA polymeraseII largest subunit (ama-1 IV) gene,
            complete cds. ).
          Length = 1859

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 26/81 (32%), Positives = 34/81 (41%), Gaps = 2/81 (2%)
 Frame = -2

Query: 724  VSPXASTTXPXXSXTSTRSSNPXFHTPTTPDL--TSISINPLTPY*KEFAPGLKPPLSSE 551
            VSP  S T P  S TS        ++PT+P    TS S +P +P     +P   P   S 
Sbjct: 1615 VSPSYSPTSPSYSPTSPS------YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSY 1668

Query: 550  APSAYLTPSSLGMAKGVSPPY 488
            +PS+     S       SP Y
Sbjct: 1669 SPSSPSYSPSSPRYSPTSPTY 1689


>U51998-6|ABS83845.1|  825|Caenorhabditis elegans Hypothetical
           protein C12D12.1c protein.
          Length = 825

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 19/73 (26%), Positives = 31/73 (42%)
 Frame = -2

Query: 709 STTXPXXSXTSTRSSNPXFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAPSAYLT 530
           +T  P  + T+T  +NP   TPTT   TS   N ++P+       +     + AP    +
Sbjct: 488 TTPTPVPTTTNTPPANPTTATPTTVG-TSKQTNTISPHLSTITGSIVTSTPTMAPQTSAS 546

Query: 529 PSSLGMAKGVSPP 491
           P++       S P
Sbjct: 547 PTTTPTHTTASQP 559


>AL033536-4|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical
           protein Y53C10A.10 protein.
          Length = 1582

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 26/89 (29%), Positives = 38/89 (42%), Gaps = 2/89 (2%)
 Frame = -2

Query: 718 PXASTTXPXXSXTSTR--SSNPXFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAP 545
           P  ST     S TSTR  +S+    +PT  D +  S    T   +     ++   SS +P
Sbjct: 694 PPDSTIITSTSSTSTRPGTSSTATDSPTMDDTSKTS----TVTSEGTTLSIESTESSASP 749

Query: 544 SAYLTPSSLGMAKGVSPPYFQVNDESQAS 458
           S + TP  +G    VS    Q +  S +S
Sbjct: 750 SDFTTPDFIGFTSSVSRTSEQYSSSSPSS 778


>AL117195-31|CAN99709.1| 1459|Caenorhabditis elegans Hypothetical
            protein Y57A10A.18b protein.
          Length = 1459

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -2

Query: 565  PLSSEAPSAYLTPSSLGMAKGVSPP 491
            P+++EAP+A   PS   + +G SPP
Sbjct: 1203 PVAAEAPAAAAAPSRARVPRGPSPP 1227


>AL117195-30|CAB60772.3| 1456|Caenorhabditis elegans Hypothetical
            protein Y57A10A.18a protein.
          Length = 1456

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -2

Query: 565  PLSSEAPSAYLTPSSLGMAKGVSPP 491
            P+++EAP+A   PS   + +G SPP
Sbjct: 1203 PVAAEAPAAAAAPSRARVPRGPSPP 1227


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,657,169
Number of Sequences: 27780
Number of extensions: 313394
Number of successful extensions: 993
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 931
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 992
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2050970610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)