Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_T7_K03
         (777 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0183 - 21681673-21682524                                         29   4.1  
04_04_1106 - 30948626-30948724,30948841-30949176,30949231-309493...    29   5.4  
03_06_0524 - 34502286-34502609,34502998-34503084,34503280-345033...    29   5.4  

>03_05_0183 - 21681673-21682524
          Length = 283

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -2

Query: 344 SQAFIATLLFDPSMSALPIIAKQNSPS 264
           SQAF A LL D + +A+P++  Q  P+
Sbjct: 229 SQAFSAVLLADANRAAIPVVVVQKRPA 255


>04_04_1106 -
           30948626-30948724,30948841-30949176,30949231-30949353,
           30949425-30949517,30949603-30949806,30949884-30950134,
           30951011-30952391,30952737-30953174
          Length = 974

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = +3

Query: 546 RCTAPVKLPALAVSSNRITREF*TATSVSATSPLCTLGTXHRAPPIL 686
           RC  P+    LAV + R+     ++ +V    P+  +GT    PPIL
Sbjct: 97  RCACPICAAELAVDTARLRHYLLSSAAVEGAVPVVPIGT-SSPPPIL 142


>03_06_0524 -
           34502286-34502609,34502998-34503084,34503280-34503360,
           34503962-34504114,34504898-34504954,34505050-34505296,
           34505412-34505527,34506074-34506225,34506713-34506902,
           34506976-34507169,34507256-34507388
          Length = 577

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 17/45 (37%), Positives = 19/45 (42%)
 Frame = -1

Query: 711 GGRNRARSIISAAHGXSFQACRVVTWRKRSSPFKTPA*SGSRTLP 577
           GGR R R    A    +FQ    V  R+  S FK  A  G   LP
Sbjct: 21  GGRFRGRRGAVACRAATFQQLDAVAVREEESKFKAGAAEGCNILP 65


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,329,733
Number of Sequences: 37544
Number of extensions: 427895
Number of successful extensions: 1109
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1076
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1109
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)