Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_T7_K02
         (855 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_1084 + 9885562-9885696,9885762-9886220,9886269-9886619           32   0.67 
06_02_0125 + 12122812-12122911,12123647-12123993                       31   1.5  
01_06_1670 - 39007402-39008229,39008320-39008567,39009159-390093...    28   8.3  

>07_01_1084 + 9885562-9885696,9885762-9886220,9886269-9886619
          Length = 314

 Score = 31.9 bits (69), Expect = 0.67
 Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = -2

Query: 422 RAGRXTPXVXAAAYXTXAALVXXGQXCRRAPPPP-LRSLIS 303
           R+GR    +  AA  T A  +  G   R APPPP LRSL++
Sbjct: 69  RSGRGGTDLAVAAAATGATPLATGAGWREAPPPPSLRSLLA 109


>06_02_0125 + 12122812-12122911,12123647-12123993
          Length = 148

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 22/78 (28%), Positives = 24/78 (30%)
 Frame = -1

Query: 753 GXGGXGXXGYGXGXVXKVPXPXXGXGXGXXRXRXXXXXYGRGXXXAXGXXGXXXXXXXPX 574
           G GG G  GYG G       P  G G G    +     YG     + G  G         
Sbjct: 68  GGGGYGHPGYGGGYGGGYGHPGYGGGYGGGYGQGYGCGYGH-PGHSGGYGGGYGGGYGGG 126

Query: 573 LGIXGXXGAGXAXRGPRG 520
            G  G  G G    G  G
Sbjct: 127 YGGGGGYGGGGGYGGGHG 144


>01_06_1670 -
           39007402-39008229,39008320-39008567,39009159-39009364,
           39009454-39011054
          Length = 960

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 20/74 (27%), Positives = 22/74 (29%), Gaps = 2/74 (2%)
 Frame = +3

Query: 540 PXPPPXHLEXLGXGSXXXAXXPXAXXXXGPLSRKXHXXXXASXXXS--PXXPXVXGLXQP 713
           P PPP     L          P       PL          +   +  P  P V     P
Sbjct: 357 PPPPPPFAPTLPPPPPPRRKPPSPSPPSSPLIENTSALRSTTTTDTTIPRNPFVQ--PPP 414

Query: 714 XPXHTHXPXXPPXP 755
            P HTH P  PP P
Sbjct: 415 PPTHTHGPPPPPPP 428


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,232,826
Number of Sequences: 37544
Number of extensions: 233716
Number of successful extensions: 919
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 714
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 864
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2385713652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)