Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_T7_J24
         (848 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC365.05c |slu7||splicing factor Slu7|Schizosaccharomyces pomb...    60   4e-10
SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase...    28   1.5  
SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyce...    27   2.5  
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces...    27   2.5  
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce...    26   5.9  

>SPBC365.05c |slu7||splicing factor Slu7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 60.1 bits (139), Expect = 4e-10
 Identities = 30/90 (33%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
 Frame = -3

Query: 597 YDPKTRXMRDNPTPNVPESEYGGENSVRVSG-DTAQHAAAQLFAWEARAHGLDLHLLAEP 421
           Y+PK+R MRD    ++ +   GG   V+ SG +       Q+FAWEA   G  +H++A P
Sbjct: 240 YEPKSRSMRDETGYHMVDDSSGGAGFVKASGGEKEDFEKLQMFAWEAERSGTRVHVVANP 299

Query: 420 TKLQMLQAHYKRDQQRYKSQVKQSILEKYG 331
           T  ++     K  +   +  + QSIL++YG
Sbjct: 300 TAGELEFRKNKASRMTTQKHIDQSILDRYG 329


>SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase
            Gpt1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1448

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = +1

Query: 37   VDNFLSSDTGSTTVFPASPTQYDIFIKE*QHL*PHWPSRQYEPQTVVW 180
            ++NFLS    S+   PA   +Y+   +   +  PHW  +Q E Q  +W
Sbjct: 1192 IENFLSPSFKSS--IPAIAKKYNFEYEYITYNWPHWLRKQEEKQREIW 1237


>SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +2

Query: 191 EHPLHIYSWQVASLPR*RACRPXL*RVNTS 280
           E P  IY W++ S P     RP   ++NTS
Sbjct: 392 EMPTTIYFWKIYSAPTWMLARPKFSQINTS 421


>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 369

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -2

Query: 682 EAAHHSXNLRIREDTAKYLRNLDPXXRXXRPQDS 581
           E  H+S  L   ED +K +RN  P  R  R  D+
Sbjct: 287 ELGHNSWRLEYGEDRSKRMRNKSPMARSGRFNDA 320


>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 604

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -3

Query: 378 QRYKSQVKQSILEKYGGEEHLQSVPREL 295
           Q  +  VK+   EKYG   H+  VP EL
Sbjct: 527 QELEQDVKEECDEKYGKVVHIAVVPNEL 554


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,724,296
Number of Sequences: 5004
Number of extensions: 48717
Number of successful extensions: 140
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)