Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_T7_J23
         (792 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces...    46   5e-06
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch...    35   0.015
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar...    35   0.015
SPAC4F10.02 |||aminopeptidase |Schizosaccharomyces pombe|chr 1||...    26   5.4  
SPBC31E1.04 |pep12||SNARE Pep12|Schizosaccharomyces pombe|chr 2|...    26   5.4  
SPBC1711.12 |||serine peptidase |Schizosaccharomyces pombe|chr 2...    25   9.4  
SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces pomb...    25   9.4  

>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score = 46.4 bits (105), Expect = 5e-06
 Identities = 19/29 (65%), Positives = 21/29 (72%)
 Frame = -3

Query: 778 QELFSAFRXXFTXMFRRKAFLHWYPGEGM 692
           QE+F      F+ MFRRKAFLHWY GEGM
Sbjct: 375 QEIFRRLGDQFSAMFRRKAFLHWYTGEGM 403



 Score = 40.3 bits (90), Expect = 3e-04
 Identities = 18/20 (90%), Positives = 19/20 (95%)
 Frame = -1

Query: 687 EMEFPEAESNMDDLVSEYQQ 628
           EMEF EAESNM+DLVSEYQQ
Sbjct: 405 EMEFTEAESNMNDLVSEYQQ 424


>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 455

 Score = 34.7 bits (76), Expect = 0.015
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -3

Query: 775 ELFSAFRXXFTXMFRRKAFLHWYPGEGM 692
           E +S     F  M+ ++AF+HWY GEGM
Sbjct: 390 EAWSRLDHKFDLMYSKRAFVHWYVGEGM 417


>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 449

 Score = 34.7 bits (76), Expect = 0.015
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -3

Query: 775 ELFSAFRXXFTXMFRRKAFLHWYPGEGM 692
           E +S     F  M+ ++AF+HWY GEGM
Sbjct: 386 EAWSRLDHKFDLMYSKRAFVHWYVGEGM 413


>SPAC4F10.02 |||aminopeptidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 467

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +3

Query: 447 SYYINTKSKSIVDLSKGERWKGG 515
           SY++     SI+  S G++WK G
Sbjct: 56  SYFVTRNKSSIIAFSIGKKWKPG 78


>SPBC31E1.04 |pep12||SNARE Pep12|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 317

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -1

Query: 474 FCFSYLYSNFNSFRLQHA**NNLGSTR 394
           FCF   ++ F+SFR Q+A   NL S R
Sbjct: 243 FCFLKSFAMFSSFRSQNANLYNLNSIR 269


>SPBC1711.12 |||serine peptidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 683

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -1

Query: 738 CSGARLSCIGTPARAWXEMEFPEAESNMDDLV 643
           CS  RL+  G    AW EM+ P+ ES+ + ++
Sbjct: 271 CSSPRLAKDGNHI-AWLEMQTPQYESDQNQIM 301


>SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 821

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -2

Query: 374 VFTFPVFFLDYEGQLWNVYCSKQLPSTTRA 285
           + TFP    D + QLWNV     L S +++
Sbjct: 72  ILTFPFLDPDSQNQLWNVNFRNLLKSLSKS 101


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,592,672
Number of Sequences: 5004
Number of extensions: 44420
Number of successful extensions: 89
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)