Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_T7_J15
         (799 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein ...    28   1.8  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    27   2.4  
SPBC16H5.06 |rip1||ubiquinol-cytochrome-c reductase complex subu...    27   3.1  
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   5.4  
SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity fac...    26   7.2  
SPBC2G2.14 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   7.2  
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos...    25   9.5  
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c...    25   9.5  

>SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein
           Lsb1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 296

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +3

Query: 387 PRLVRGAPEPQRTTTPQDL-SAEHRAPPHPAIDGP 488
           PR + G P PQ+ +    + S+  + PP P+  GP
Sbjct: 101 PRKLPGVPAPQKQSEASSVNSSTEKLPPPPSYPGP 135


>SPAC29B12.07 |sec16||multidomain vesicle coat component
            Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 20/56 (35%), Positives = 24/56 (42%)
 Frame = +3

Query: 309  GPPSPAPTPMLRWAGSATGDFFPLSSPRLVRGAPEPQRTTTPQDLSAEHRAPPHPA 476
            GPPS APT  L  AG   G      +P +    P   + T    LS+   APP  A
Sbjct: 1894 GPPSAAPTSALPPAGPPAGATAISGNPGMPAPVPLTGKETA-VPLSSMPNAPPSVA 1948


>SPBC16H5.06 |rip1||ubiquinol-cytochrome-c reductase complex subunit
           5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 228

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -3

Query: 128 RLLPLSSTGGAESDITRSDPRRQGIRKE*DSPSIP 24
           RLLP+SST  +      + P+   IR   DSP +P
Sbjct: 17  RLLPVSSTASSLKGSMMTIPKFTSIRTYTDSPEMP 51


>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 262

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 16/41 (39%), Positives = 19/41 (46%)
 Frame = +3

Query: 312 PPSPAPTPMLRWAGSATGDFFPLSSPRLVRGAPEPQRTTTP 434
           PP PAP    R A   + +   +SSP  V   P  QR T P
Sbjct: 222 PPPPAPPKPRRLAARTSSNSSGVSSPTSV--PPPVQRNTRP 260


>SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity factor
           complex subunit, Fip1 homolog |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 344

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +3

Query: 363 GDFFPLSSPRLVRGAPEPQRTTTPQDLSAEHRAP 464
           G   P + P++ + A E  +TT PQDLS    AP
Sbjct: 71  GSTRPSAKPQVEKTAVEV-KTTEPQDLSTAETAP 103


>SPBC2G2.14 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 533

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +1

Query: 166 ETTPLXKARWAKFSSRQTRPA*RLPTKPQRAPPLRLSGDP 285
           + TP+ KARW + +++    +    + P  +P LR S  P
Sbjct: 459 QLTPIPKARWNQLANKHPSLSNSAASPPVSSPGLRRSHIP 498


>SPBC947.01 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 660

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 3/65 (4%)
 Frame = +3

Query: 279 RPRYRHVRAIGPPSPAPTPMLRWAGSATGDFFPLSSP---RLVRGAPEPQRTTTPQDLSA 449
           R  Y+    +   +P     LR   S T  + P+++    R  RGA      +TP+ + +
Sbjct: 86  RQNYQLAAKLSKKAPVDLHPLRPVRSQTPAYTPMTTRMMYRQTRGAQSEVNLSTPKQIYS 145

Query: 450 EHRAP 464
           +H  P
Sbjct: 146 KHSPP 150


>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1274

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = +1

Query: 271 LSGDPGTAMCAP*ARLRRLPPQCYVGRDLPPGTSSPS 381
           L GD G ++ AP   +  +PP       L  GTS  S
Sbjct: 479 LDGDTGVSIYAPGGAITSVPPYSLQNSQLMNGTSMSS 515


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,943,229
Number of Sequences: 5004
Number of extensions: 58122
Number of successful extensions: 164
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)