Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_T7_J15
         (799 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    29   0.050
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   3.3  
DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex det...    22   5.7  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   5.7  
AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin prot...    22   7.6  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 29.1 bits (62), Expect = 0.050
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = +1

Query: 379 SHLHDS*GAHQSHSAPPPHRTLVPSTGRPRTQQSTAPGRSRVGAFCPHHP 528
           SH+H +   H SH+A P H+   P         S+ P   ++G    HHP
Sbjct: 424 SHIHATPHHHHSHAATPHHQHSTP------LAHSSYPAAIQIGHTPHHHP 467


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 13/45 (28%), Positives = 18/45 (40%)
 Frame = +1

Query: 361 PGTSSPSHLHDS*GAHQSHSAPPPHRTLVPSTGRPRTQQSTAPGR 495
           P   S + +H S G   S   P P  T +  +G  R   +  P R
Sbjct: 362 PSKCSQTSVHYSNGQTHSQLCPTPRSTHLKVSGINRVGSTRRPSR 406


>DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +3

Query: 273 ERRPRYRHVRAIGPPSPAP 329
           E+ PR+R    IGPP+P P
Sbjct: 143 EQVPRFR---CIGPPTPFP 158


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +3

Query: 402 GAPEPQRTTTPQDLSAEHRAPPHPAIDGP 488
           GAP PQ +      + +  +PP+P+  GP
Sbjct: 19  GAPGPQPSPHQSPQAPQRGSPPNPS-QGP 46


>AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin
           protein.
          Length = 339

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -2

Query: 402 PSRVVEMRGGRSPRWQ 355
           P R +  RG ++PRW+
Sbjct: 305 PFRYLGARGKKNPRWE 320


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 216,957
Number of Sequences: 438
Number of extensions: 5451
Number of successful extensions: 13
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25246416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)