Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP08_T7_J09
(799 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0498 - 29520062-29520758,29521552-29521860,29523525-29524735 34 0.11
06_02_0187 + 12805788-12807007,12807059-12807186,12807811-128078... 34 0.15
06_03_0804 + 24761974-24763196,24763674-24764019 33 0.26
05_07_0331 - 29324967-29326256,29326919-29327020,29327226-293272... 33 0.35
05_07_0157 - 28079181-28079720 30 1.9
11_06_0180 + 20962420-20962528,20962618-20962699,20962831-209629... 29 5.7
07_03_0476 - 18547223-18548187,18548743-18549958 28 7.5
10_01_0162 + 1820761-1821855 28 9.9
09_04_0115 - 14789499-14790288,14792055-14792441,14792820-14793193 28 9.9
02_02_0100 - 6783821-6784339,6784815-6784984,6785062-6785164,678... 28 9.9
>02_05_0498 - 29520062-29520758,29521552-29521860,29523525-29524735
Length = 738
Score = 34.3 bits (75), Expect = 0.11
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = -2
Query: 585 QFAAFNDCLYRSMSSAGWLLVIDVDE-VVLPH 493
QF NDCL+R +A W DVDE + LP+
Sbjct: 334 QFLVVNDCLHRYRHAANWTFFFDVDEYIYLPN 365
>06_02_0187 +
12805788-12807007,12807059-12807186,12807811-12807859,
12808508-12808853
Length = 580
Score = 33.9 bits (74), Expect = 0.15
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -2
Query: 585 QFAAFNDCLYRSMSSAGWLLVIDVDEVV 502
QF NDCL+R +A W DVDE +
Sbjct: 337 QFLVVNDCLHRYRHAANWTFFFDVDEYI 364
>06_03_0804 + 24761974-24763196,24763674-24764019
Length = 522
Score = 33.1 bits (72), Expect = 0.26
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -2
Query: 585 QFAAFNDCLYRSMSSAGWLLVIDVDEVV 502
QF NDCL+R +A W DVDE +
Sbjct: 335 QFLVVNDCLHRYRHAARWTFFFDVDEYI 362
>05_07_0331 -
29324967-29326256,29326919-29327020,29327226-29327278,
29327628-29327674,29327762-29327841,29327933-29328016,
29328383-29328433,29328925-29329050,29329231-29329347,
29329710-29329851,29329986-29330053,29330509-29330608,
29330713-29330840,29330929-29330997,29331083-29331205
Length = 859
Score = 32.7 bits (71), Expect = 0.35
Identities = 17/43 (39%), Positives = 28/43 (65%)
Frame = +2
Query: 35 IYVGQAMVKLFLSVFILCWSSSVHRCAVRSTVDGTVRQFMPPN 163
IYV A V+ F+ +++ +SS +H CAVR V+ +R +PP+
Sbjct: 294 IYVRHAKVQNFVLLYV--FSSWMHFCAVRVFVESILRYGLPPS 334
>05_07_0157 - 28079181-28079720
Length = 179
Score = 30.3 bits (65), Expect = 1.9
Identities = 20/56 (35%), Positives = 26/56 (46%)
Frame = +1
Query: 112 RGAVHGGRDRQTVHAAEFACDPIVVEQGPVGGHADGASPWRELPQEVVPELDGVAR 279
RG V ++R V AA FA +V G GG DGA + V+ E+ AR
Sbjct: 69 RGLVDHLQERLGVSAAAFAPAAVVAAPGAAGGGEDGAPAEKTEFDVVIEEVPSSAR 124
>11_06_0180 +
20962420-20962528,20962618-20962699,20962831-20962948,
20963024-20963062,20963181-20963343,20963706-20963921,
20964039-20964116,20964244-20964500,20964544-20964575,
20964815-20965197,20965262-20965831,20966250-20966343,
20966365-20966541,20966761-20966963,20968244-20968301,
20969126-20969381,20969553-20969789
Length = 1023
Score = 28.7 bits (61), Expect = 5.7
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = -2
Query: 675 CSTXXRKQXLITLLPWKLPIVSKAEIRTEGQFAAFNDCLYRSM 547
CST R+ L + +L I+ KA I TE DC+ +SM
Sbjct: 19 CSTYFREAQLDRVYYARLSIIQKARIITECLHRFCRDCIEKSM 61
>07_03_0476 - 18547223-18548187,18548743-18549958
Length = 726
Score = 28.3 bits (60), Expect = 7.5
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = -1
Query: 172 RMRIRRHELSDGPVHRGPHRAPVDRRAPTEDKHREEKLN 56
+MR R HEL G +HR H ++ D E LN
Sbjct: 385 KMRARAHELGAGELHRRKHGKAWEKLIEKHDVGENEWLN 423
>10_01_0162 + 1820761-1821855
Length = 364
Score = 27.9 bits (59), Expect = 9.9
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +3
Query: 93 ARRSTGARCGPRWTGPSDSSCRRI 164
ARR GAR W+ +D CRR+
Sbjct: 144 ARRERGARLAALWSALADRLCRRV 167
>09_04_0115 - 14789499-14790288,14792055-14792441,14792820-14793193
Length = 516
Score = 27.9 bits (59), Expect = 9.9
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -3
Query: 227 GLAPSACPPTGPCSTTIGSHA 165
G +P+A PPTGP S+ S A
Sbjct: 52 GASPAAAPPTGPASSPAASPA 72
>02_02_0100 -
6783821-6784339,6784815-6784984,6785062-6785164,
6785291-6785454,6786781-6786821,6786933-6787129
Length = 397
Score = 27.9 bits (59), Expect = 9.9
Identities = 16/25 (64%), Positives = 16/25 (64%), Gaps = 4/25 (16%)
Frame = -1
Query: 382 GGRQGGDGAAY-DGSQD---APLGD 320
GGR GGDG AY D S D AP GD
Sbjct: 39 GGRDGGDGGAYGDASGDDGRAPGGD 63
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,097,616
Number of Sequences: 37544
Number of extensions: 431702
Number of successful extensions: 1454
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1410
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1454
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2162420256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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