Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_T7_J05
         (791 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    25   0.81 
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    22   5.7  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    22   5.7  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    22   5.7  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    22   5.7  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    21   9.9  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   9.9  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 25.0 bits (52), Expect = 0.81
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = +2

Query: 41  SLNRSQHDAALPSTTPRQERKSST 112
           ++N+ Q   +   TTP++ERK++T
Sbjct: 776 NVNKEQSPNSTKETTPKKERKTAT 799


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -3

Query: 414 ALGRAAGGAKLPSAGLCLNASKAEASL 334
           ALGR AGG    S+ L L+ +   +SL
Sbjct: 5   ALGRCAGGGGRLSSVLSLSLTSLASSL 31


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -3

Query: 414 ALGRAAGGAKLPSAGLCLNASKAEASL 334
           ALGR AGG    S+ L L+ +   +SL
Sbjct: 5   ALGRCAGGGGRLSSVLSLSLTSLASSL 31


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -3

Query: 414 ALGRAAGGAKLPSAGLCLNASKAEASL 334
           ALGR AGG    S+ L L+ +   +SL
Sbjct: 5   ALGRCAGGGGRLSSVLSLSLTSLASSL 31


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -3

Query: 414 ALGRAAGGAKLPSAGLCLNASKAEASL 334
           ALGR AGG    S+ L L+ +   +SL
Sbjct: 5   ALGRCAGGGGRLSSVLSLSLTSLASSL 31


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 11/32 (34%), Positives = 14/32 (43%)
 Frame = -2

Query: 478 CRCDSNTAQXREEPQFRTFGSCTRPSGRWCEA 383
           C C     + R +P FR   S    SGR+  A
Sbjct: 406 CACCPGRVRRRYQPAFRCKPSQRFASGRYYSA 437


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +3

Query: 93  RNGSRLQTIQSPDIEL 140
           RNG+ L+T+  P+I +
Sbjct: 346 RNGADLETLNEPEIRV 361


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 220,980
Number of Sequences: 438
Number of extensions: 4488
Number of successful extensions: 17
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25003662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)