Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_T7_I22
         (910 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0515 - 3864796-3865425                                           30   2.9  
12_02_1174 - 26696869-26698191                                         29   3.9  
10_03_0023 - 7151465-7152111,7152222-7152405                           29   6.7  
12_02_0297 + 17029850-17030047,17030814-17030973,17031666-170317...    28   8.9  
05_01_0028 + 182528-183852,183967-184127,184872-185116,185330-18...    28   8.9  

>03_01_0515 - 3864796-3865425
          Length = 209

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 17/69 (24%), Positives = 21/69 (30%)
 Frame = +3

Query: 585 PIXIXXRPXXAXNPGPXLVXPXXXXRPPXSXXKKXLQXPPPXRXPXPXXLSPXPAXPXXP 764
           P  +   P    +P P    P     PP          PP    P P   SP P  P  P
Sbjct: 48  PPPLAPPPSVTSSPPPPAAGPLMPPPPPPPSVTSSPPPPPLPPPPPPPAASPPPPPPSPP 107

Query: 765 VVTXFXXTP 791
             +    +P
Sbjct: 108 PPSPVKSSP 116


>12_02_1174 - 26696869-26698191
          Length = 440

 Score = 29.5 bits (63), Expect = 3.9
 Identities = 17/52 (32%), Positives = 19/52 (36%), Gaps = 2/52 (3%)
 Frame = +3

Query: 606 PXXAXNPGPXLVXPXXXXRPPXSXXKKXLQXPPPXRXP--XPXXLSPXPAXP 755
           P  +  P P  V P      P     K    PPP R P   P  L P P+ P
Sbjct: 217 PPPSPPPPPPTVPPRTPGDTPAVVEPKPQPPPPPPRAPVKMPRVLEPKPSPP 268


>10_03_0023 - 7151465-7152111,7152222-7152405
          Length = 276

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 17/55 (30%), Positives = 19/55 (34%), Gaps = 5/55 (9%)
 Frame = +3

Query: 606 PXXAXNPGPXLVXPXXXXRPPXSXX-----KKXLQXPPPXRXPXPXXLSPXPAXP 755
           P     P P  + P    +PP S          L  PPP   P P  L P P  P
Sbjct: 201 PPVFPTPSPPSILPPLTPQPPPSSLIPPVLPLPLLNPPPPPPPPPSLLPPVPLLP 255


>12_02_0297 +
           17029850-17030047,17030814-17030973,17031666-17031782,
           17032145-17032575
          Length = 301

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = +3

Query: 690 LQXPPPXRXPXPXXLSPXPAXP 755
           L  PPP   P P  +SP PA P
Sbjct: 124 LMPPPPLAAPVPAAVSPAPATP 145


>05_01_0028 +
           182528-183852,183967-184127,184872-185116,185330-186073
          Length = 824

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 15/42 (35%), Positives = 17/42 (40%), Gaps = 2/42 (4%)
 Frame = +3

Query: 645 PXXXXRPPXSXXKKXLQXPP--PXRXPXPXXLSPXPAXPXXP 764
           P    RPP    +     PP  P   P P  +SP PA P  P
Sbjct: 75  PPPAPRPPRRHHRIPPPPPPLLPTPPPPPASISPTPAPPLPP 116


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,624,829
Number of Sequences: 37544
Number of extensions: 231522
Number of successful extensions: 898
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 720
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 859
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2577242800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)