Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP08_T7_I21
(769 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 293 2e-80
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 289 3e-79
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 118 1e-27
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 64 2e-11
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 35 0.011
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi... 35 0.015
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 32 0.10
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 31 0.18
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 31 0.24
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 30 0.32
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 30 0.32
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 29 0.55
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 28 1.3
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 28 1.3
SPAC25H1.06 |||histone acetyltransferase complex subunit |Schizo... 27 2.2
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 27 3.9
SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr ... 27 3.9
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 27 3.9
SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch... 26 5.2
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl... 26 6.8
SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc... 25 9.0
SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po... 25 9.0
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 293 bits (718), Expect = 2e-80
Identities = 138/206 (66%), Positives = 159/206 (77%), Gaps = 2/206 (0%)
Frame = -3
Query: 743 SSITXXLRYDGAXNVTSPSSRLTWCLTPVSTSHWSRTRQSSL--PRRPTHEQLSVAEITN 570
SSIT LR+ G+ NV + L P H+ S + + HE SV EITN
Sbjct: 240 SSITASLRFAGSLNVDLNEFQTN--LVPYPRIHFPLVTYSPIVSAAKAFHESNSVQEITN 297
Query: 569 ACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKV 390
CFEP NQMVKCDPR G+YMA C+LYRGDV+P+DV AA+ +IK++RTIQFVDWCPTGFK+
Sbjct: 298 QCFEPYNQMVKCDPRTGRYMATCLLYRGDVIPRDVQAAVTSIKSRRTIQFVDWCPTGFKI 357
Query: 389 GINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGM 210
GI Y+PP VPG +AKV RAVCMLSNTT+IAEAW+RLDHKFDLMY+KRAFVHWYVGEGM
Sbjct: 358 GICYEPPQHVPGSGIAKVNRAVCMLSNTTSIAEAWSRLDHKFDLMYSKRAFVHWYVGEGM 417
Query: 209 EEGEFSEAHEDLAALEKDYEEVGMDS 132
EEGEFSEA EDLAALE+DYEEVG DS
Sbjct: 418 EEGEFSEAREDLAALERDYEEVGQDS 443
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 289 bits (709), Expect = 3e-79
Identities = 136/206 (66%), Positives = 158/206 (76%), Gaps = 2/206 (0%)
Frame = -3
Query: 743 SSITXXLRYDGAXNVTSPSSRLTWCLTPVSTSHWSRTRQSSL--PRRPTHEQLSVAEITN 570
SSIT LR++G+ NV + L P H+ + + + HE SV EITN
Sbjct: 236 SSITASLRFEGSLNVDLAEFQTN--LVPYPRIHFPLVTYAPIVSAAKAFHESNSVQEITN 293
Query: 569 ACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKV 390
CFEP NQMVKCDPR G+YMA C+LYRGDV+P+DV AA+ TIK KRTIQFVDWCPTGFK+
Sbjct: 294 QCFEPYNQMVKCDPRAGRYMATCLLYRGDVIPRDVQAAVTTIKAKRTIQFVDWCPTGFKI 353
Query: 389 GINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGM 210
GI +PP + G ++AKV RAVCMLSNTT+IAEAW+RLDHKFDLMY+KRAFVHWYVGEGM
Sbjct: 354 GICDRPPQHIEGSEIAKVDRAVCMLSNTTSIAEAWSRLDHKFDLMYSKRAFVHWYVGEGM 413
Query: 209 EEGEFSEAHEDLAALEKDYEEVGMDS 132
EEGEFSEA EDLAALE+DYEEVG DS
Sbjct: 414 EEGEFSEAREDLAALERDYEEVGQDS 439
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 118 bits (283), Expect = 1e-27
Identities = 68/208 (32%), Positives = 108/208 (51%), Gaps = 5/208 (2%)
Frame = -3
Query: 743 SSITXXLRYDGAXNVTSPSSRLTWCLTPVSTSHWSRTRQSSLPR--RPTHEQLSVAEITN 570
+ +T R+ G N S +L + P H+ + L + + +SV E+T
Sbjct: 234 AGVTTSFRFPGELN--SDLRKLAVNMVPFPRLHFFMVGFAPLAAIGSSSFQAVSVPELTQ 291
Query: 569 ACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKV 390
F+ N MV DPRHG+Y+ L+RG V K+V+ I +++TK + FV+W P
Sbjct: 292 QMFDANNMMVAADPRHGRYLTVAALFRGKVSMKEVDEQIRSVQTKNSAYFVEWIPDNVLK 351
Query: 389 GINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGM 210
+ PP DL + + + N+T+I E + RL +F M+ ++AF+HWY GEGM
Sbjct: 352 AVCSVPPK-----DL---KMSATFIGNSTSIQEIFRRLGDQFSAMFRRKAFLHWYTGEGM 403
Query: 209 EEGEFSEAH---EDLAALEKDYEEVGMD 135
+E EF+EA DL + + Y+E G+D
Sbjct: 404 DEMEFTEAESNMNDLVSEYQQYQEAGID 431
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 64.1 bits (149), Expect = 2e-11
Identities = 51/210 (24%), Positives = 95/210 (45%), Gaps = 9/210 (4%)
Frame = -3
Query: 752 TXFSSITXXLRYDGAXNVTSPSSRLTWCLTPVSTSHWSRTRQSSLPRRPTHE-----QLS 588
T S+ T LRY G N S + L P H+ T + + E + +
Sbjct: 234 TVMSASTTTLRYPGYMNNDLVS--IIASLIPSPRCHFLLTSYTPFTNQQVEEAKAIRKTT 291
Query: 587 VAEITNACFEPANQMVKCDP-RHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDW 411
V ++ P NQMV +P + +++ + +G+ P DV+ ++ I+ +R F+ W
Sbjct: 292 VLDVMRRLLLPKNQMVSVNPSKKSCFISILDIIQGEADPADVHKSLLRIRERRYASFIPW 351
Query: 410 CPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVH 231
P +V ++ + P + ++ + ML+N T+IA + R ++D + + AF+
Sbjct: 352 GPASIQVALSKKSPYIKTNHRVSGL-----MLANHTSIASLFKRTLDQYDRLRKRNAFLE 406
Query: 230 WYVGEGMEE---GEFSEAHEDLAALEKDYE 150
Y E + E EF + + +A L +YE
Sbjct: 407 QYKKEAIFEDDLNEFDSSRDVVADLINEYE 436
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 35.1 bits (77), Expect = 0.011
Identities = 37/140 (26%), Positives = 56/140 (40%), Gaps = 4/140 (2%)
Frame = -1
Query: 598 NSFPXPRSQTHASSPPTRW*NAIPVMASTWLAVCCTVVTSYPRM*TRPSLPSKPSVLSNS 419
NS P P + T ++ +IP ++ V TV + + P P+ S S
Sbjct: 274 NSSPLPTTSTSCTTS-----TSIPPTGNSTTPVTPTVPPTSTSSTSTPPPPASTSSTGTS 328
Query: 418 STGVQPVSRSVST-TSHPPWCPEATWPRFNVP---SACCPTPPPSLKLGLALTTSSTSCT 251
S+ + S S +T TS PP T VP ++ TPPP T+SS +
Sbjct: 329 SSPLPSTSTSCTTSTSIPPTGNSTTPVTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLLS 388
Query: 250 PSVLSCTGTSVRVWRRESSP 191
S T TS+ ++P
Sbjct: 389 TSTSCTTSTSIPPTGNSTTP 408
Score = 29.1 bits (62), Expect = 0.73
Identities = 39/128 (30%), Positives = 50/128 (39%), Gaps = 11/128 (8%)
Frame = -1
Query: 571 THASSPPTRW*NAIPVMASTWLAVCCTVVTSYPRM*TRPSLP---SKP----SVLSNSST 413
T S PPT +++ + + T TS P T S S P S +ST
Sbjct: 117 TSTSIPPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSNPLPTTSTSCTTST 176
Query: 412 GVQPVSRSVSTTSHPPWCPEATWPRFNVPSACCPTPPPSLKL----GLALTTSSTSCTPS 245
+ P S S ++ P P T P + S P PP S L T+STSCT S
Sbjct: 177 SIPPTGGSSSLST--PITP--TVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTSTSCTTS 232
Query: 244 VLSCTGTS 221
TG S
Sbjct: 233 TSIPTGGS 240
>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 690
Score = 34.7 bits (76), Expect = 0.015
Identities = 31/116 (26%), Positives = 48/116 (41%), Gaps = 7/116 (6%)
Frame = -1
Query: 478 YPRM*TRPSLP----SKPSVLSN-SSTGVQPVSRSVSTTSHPPWCPEATWPRFNVPSACC 314
YP P+LP SKP V+ N V P +R + P+ ++P P+ C
Sbjct: 166 YPVSLPSPNLPHQPISKPPVIPNLPKLQVHP-NRLPHPIHNHPYSSPTSYPPPLCPATYC 224
Query: 313 PTPPPSLKLGLALTTSSTSCTPSVLSCTGTSVRVWRRESSP--KPMRTWLPSKRIT 152
P+ PP L A+ SS S ++ + T + + P + WLP + T
Sbjct: 225 PSNPPQLAPATAIAPSSQSSQHKSVNYSVTPSSINNHTAVPLSPTLAVWLPMTQPT 280
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 31.9 bits (69), Expect = 0.10
Identities = 24/94 (25%), Positives = 37/94 (39%)
Frame = -1
Query: 445 SKPSVLSNSSTGVQPVSRSVSTTSHPPWCPEATWPRFNVPSACCPTPPPSLKLGLALTTS 266
S P+ S + PVS + T + PP A R N A P + + A T S
Sbjct: 1001 SMPAAKSKPAPMANPVSTAQQTQNRPP--APAMQARPNTTQAAAPVTSTTTTIKQATTVS 1058
Query: 265 STSCTPSVLSCTGTSVRVWRRESSPKPMRTWLPS 164
++ PS ++ +S + S+P PS
Sbjct: 1059 ASKPAPSTVTSAASSPSNISKPSAPVANNVSKPS 1092
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 31.1 bits (67), Expect = 0.18
Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
Frame = -1
Query: 436 SVLSNSSTGVQPVSRSVSTTSHPPWCPEATWPRFNVPSACCPTPPPSLKLGLALTTSSTS 257
S+L +S+ P+S + STT+ T ++ TP S+ + T +STS
Sbjct: 280 SLLPSSTPSSTPLSSANSTTATSASSTPLTSVNSTTTTSASSTPLSSVSSANSTTATSTS 339
Query: 256 CTP--SVLSCTGTS 221
TP SV S T TS
Sbjct: 340 STPLSSVNSTTATS 353
Score = 26.6 bits (56), Expect = 3.9
Identities = 32/120 (26%), Positives = 47/120 (39%)
Frame = -1
Query: 577 SQTHASSPPTRW*NAIPVMASTWLAVCCTVVTSYPRM*TRPSLPSKPSVLSNSSTGVQPV 398
S T +S+P + + AS+ T+ T S S + + +ST P+
Sbjct: 284 SSTPSSTPLSSANSTTATSASSTPLTSVNSTTTTSASSTPLSSVSSANSTTATSTSSTPL 343
Query: 397 SRSVSTTSHPPWCPEATWPRFNVPSACCPTPPPSLKLGLALTTSSTSCTPSVLSCTGTSV 218
S STT+ T ++ TP S+ A + SST T S S T TSV
Sbjct: 344 SSVNSTTATSASSTPLTSVNSTTATSASSTPLTSVNSTSATSASSTPLT-SANSTTSTSV 402
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 30.7 bits (66), Expect = 0.24
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = -1
Query: 490 VVTSYPRM*TRPSLPSKPSVLSNSSTGVQPVSRSVSTTSHPPWCP 356
VV P + RP++P P LS V PV+ V + PP P
Sbjct: 552 VVPEAPSVPQRPAVPVVPEALSVPQPPVAPVAPEVPSVPQPPVAP 596
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 30.3 bits (65), Expect = 0.32
Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Frame = -1
Query: 436 SVLSNSSTGVQPVSRSVSTTSHPPWCPEATWPRFNVPSACCPTPPPSLKLGL-ALTTSST 260
S+L ST V + T P AT R+N + P P P G+ A+ T++T
Sbjct: 1581 SLLGEEST-VSTMYGVKPTLPETPKPAIATHSRYNASFSSSPPPQPGNSSGMSAMNTNTT 1639
Query: 259 SCTPSVLS 236
S TP LS
Sbjct: 1640 STTPVSLS 1647
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 30.3 bits (65), Expect = 0.32
Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Frame = -1
Query: 436 SVLSNSSTGVQPVSRSVSTTSHPPWCPEATWPRFNVPSACCPTPPPSLKLGL-ALTTSST 260
S+L ST V + T P AT R+N + P P P G+ A+ T++T
Sbjct: 1581 SLLGEEST-VSTMYGVKPTLPETPKPAIATHSRYNASFSSSPPPQPGNSSGMSAMNTNTT 1639
Query: 259 SCTPSVLS 236
S TP LS
Sbjct: 1640 STTPVSLS 1647
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 29.5 bits (63), Expect = 0.55
Identities = 17/55 (30%), Positives = 25/55 (45%)
Frame = -1
Query: 448 PSKPSVLSNSSTGVQPVSRSVSTTSHPPWCPEATWPRFNVPSACCPTPPPSLKLG 284
P+ P + S P + S TS PP + P + P + P+ PPSL +G
Sbjct: 389 PAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPP-SAPPSLPPSAPPSLPMG 442
Score = 27.5 bits (58), Expect = 2.2
Identities = 19/70 (27%), Positives = 27/70 (38%), Gaps = 1/70 (1%)
Frame = -1
Query: 454 SLPSKPSVLSNSSTGVQPVSRSVSTT-SHPPWCPEATWPRFNVPSACCPTPPPSLKLGLA 278
S P+ P + + S T PV S S PP P + P + + P PPS +
Sbjct: 399 SAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPP 458
Query: 277 LTTSSTSCTP 248
L + P
Sbjct: 459 LPAGMPAAPP 468
Score = 25.4 bits (53), Expect = 9.0
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Frame = -1
Query: 385 STTSHPPWCPE--ATWPRFNVPSACCPTPPP 299
++TS PP P ++ P VPS P PPP
Sbjct: 225 TSTSAPPIPPSIPSSRPPERVPSLSAPAPPP 255
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 28.3 bits (60), Expect = 1.3
Identities = 14/42 (33%), Positives = 18/42 (42%)
Frame = -3
Query: 578 ITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAI 453
+ ACFEP N C H K C L + KD N ++
Sbjct: 361 LCGACFEPINAKCYCG-LHSKTYPCSSLPSPSISKKDENGSV 401
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 28.3 bits (60), Expect = 1.3
Identities = 36/139 (25%), Positives = 54/139 (38%), Gaps = 7/139 (5%)
Frame = -1
Query: 688 VPD*LGALPPYPLPTGHVRASHLCREG----LPMNSFPXPRSQTHASS--PPTRW*NA-I 530
VP PP PLP+ + +P ++ P P+S + A S PP ++ I
Sbjct: 1014 VPKLSSKAPPVPLPSADAPPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEI 1073
Query: 529 PVMASTWLAVCCTVVTSYPRM*TRPSLPSKPSVLSNSSTGVQPVSRSVSTTSHPPWCPEA 350
P + + A + P + +PS+ + P + S V PV P P
Sbjct: 1074 PSIPAPSGAPPVPAPSGIPPV-PKPSVAAPP--VPKPSVAVPPVPAPSGAPPVPK--PSV 1128
Query: 349 TWPRFNVPSACCPTPPPSL 293
P VPS P P PS+
Sbjct: 1129 AAPPVPVPSGAPPVPKPSV 1147
Score = 27.9 bits (59), Expect = 1.7
Identities = 26/82 (31%), Positives = 36/82 (43%), Gaps = 3/82 (3%)
Frame = -1
Query: 484 TSYPRM*TRPSLP-SKPSVLSNSS--TGVQPVSRSVSTTSHPPWCPEATWPRFNVPSACC 314
TS P PS P SKP S ++ V PV + +S+ + P P A P VPS
Sbjct: 983 TSEPPKDHPPSAPLSKPVSTSPAAPLARVPPVPK-LSSKAPPVPLPSADAPPIPVPSTAP 1041
Query: 313 PTPPPSLKLGLALTTSSTSCTP 248
P P P+ + ++S P
Sbjct: 1042 PVPIPTSTPPVPKSSSGAPSAP 1063
Score = 26.6 bits (56), Expect = 3.9
Identities = 23/73 (31%), Positives = 28/73 (38%)
Frame = -1
Query: 688 VPD*LGALPPYPLPTGHVRASHLCREGLPMNSFPXPRSQTHASSPPTRW*NAIPVMASTW 509
VP LPP P+PT +P S P T SS P+ NA P S+
Sbjct: 1219 VPTPSAGLPPVPVPTAKA-------PPVPAPSSEAPSVSTPRSSVPSPHSNASPSPTSSS 1271
Query: 508 LAVCCTVVTSYPR 470
+A TS R
Sbjct: 1272 MASAAPARTSVSR 1284
>SPAC25H1.06 |||histone acetyltransferase complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 408
Score = 27.5 bits (58), Expect = 2.2
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -3
Query: 686 SRLTWCLTPVSTSHWSRTRQSSLPRRPTHEQLSVA 582
SR T CLTPV H+ + + + P H L +A
Sbjct: 216 SRDTRCLTPVKDFHYDDSPVNDVEYHPHHTNLYIA 250
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 26.6 bits (56), Expect = 3.9
Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Frame = -1
Query: 445 SKPSVLSNSSTGVQP--VSRSVSTTSHPPWC--PEATWPRFNVPSACCPTPPP 299
S P+ S++GV VS S S PP P A P ++PS P PPP
Sbjct: 141 SAPASQEPSASGVNAPTVSAPNSMVSPPPSFQPPSAAAPATSLPSDYNPPPPP 193
>SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 736
Score = 26.6 bits (56), Expect = 3.9
Identities = 16/53 (30%), Positives = 25/53 (47%)
Frame = -1
Query: 394 RSVSTTSHPPWCPEATWPRFNVPSACCPTPPPSLKLGLALTTSSTSCTPSVLS 236
++ S T+ P P ++ FN PSA P P++ + +T TPS S
Sbjct: 453 KAPSATTDKPSPPVSSIFSFNAPSAASTKPSPAVSSTFSFNAPTT--TPSATS 503
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 26.6 bits (56), Expect = 3.9
Identities = 13/48 (27%), Positives = 22/48 (45%)
Frame = +3
Query: 450 SDGRVHILGYDVTTVQHTASHVLAMTGIAFHHLVGGLEACVCDLGXGK 593
S G +LGY ++ A++V+A + + HL+ G D K
Sbjct: 407 SAGLTSLLGYHLSVKTPQATYVVARSIVMLDHLIDGYSMAFPDFSESK 454
>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 628
Score = 26.2 bits (55), Expect = 5.2
Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 3/32 (9%)
Frame = -1
Query: 454 SLPSKPSV---LSNSSTGVQPVSRSVSTTSHP 368
+LP KPS+ +++S V+P S STTS+P
Sbjct: 5 TLPPKPSISPSIASSFPTVKPFSSQNSTTSNP 36
>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 709
Score = 25.8 bits (54), Expect = 6.8
Identities = 15/55 (27%), Positives = 23/55 (41%)
Frame = -1
Query: 328 PSACCPTPPPSLKLGLALTTSSTSCTPSVLSCTGTSVRVWRRESSPKPMRTWLPS 164
P+ + P + G+ TS TS T S S++ S+P P W P+
Sbjct: 134 PATSSFSDPKAFSAGVPKFTSDTSSTVSSTPSLNHSLQNSMPPSTPTPPPVWAPT 188
>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1063
Score = 25.4 bits (53), Expect = 9.0
Identities = 24/90 (26%), Positives = 36/90 (40%), Gaps = 2/90 (2%)
Frame = -1
Query: 487 VTSYPRM*TRPSLP--SKPSVLSNSSTGVQPVSRSVSTTSHPPWCPEATWPRFNVPSACC 314
+T+ R T+P+ P S+ +N + S S+ S P +A +VP +
Sbjct: 498 LTNKARNATQPTQPPVSQVDYSNNLPPNLDTSSTFRSSASPPSAFTKAGNEALSVPLSGA 557
Query: 313 PTPPPSLKLGLALTTSSTSCTPSVLSCTGT 224
S LA SS S +L C GT
Sbjct: 558 RNTAASRPTNLAAGNSSASIVQQLLECGGT 587
>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 665
Score = 25.4 bits (53), Expect = 9.0
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = -1
Query: 457 PSLPSKPSVLSNSST--GVQPVSRSVSTTSHPPW 362
P PS+P+++SN ST G+Q V V + W
Sbjct: 531 PISPSRPALISNISTKKGIQVVGNMVYDPTRLRW 564
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,183,127
Number of Sequences: 5004
Number of extensions: 72249
Number of successful extensions: 293
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 249
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 284
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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