Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP08_T7_I14
(794 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0793 - 20614583-20614897,20615417-20615660,20617713-206178... 32 0.60
01_06_0381 + 28878811-28879120,28880189-28880331,28880753-288815... 32 0.60
03_05_1101 - 30408944-30410410 31 1.1
05_05_0227 - 23449579-23450459,23450574-23450691 31 1.4
01_06_0140 - 26881282-26881290,26882027-26882128,26882816-268829... 30 2.4
01_01_0140 + 1265785-1265902,1266424-1266845 29 4.3
11_05_0086 + 18964493-18965737,18965896-18966360 29 5.6
07_03_0471 + 18501496-18502104,18503009-18503260,18503367-185035... 28 7.4
02_01_0759 - 5628913-5630870,5631023-5631047 28 7.4
07_03_1544 - 27585581-27585757,27585986-27586091,27586246-275863... 28 9.8
06_03_0913 + 25913231-25913609,25913702-25913775,25914400-259145... 28 9.8
03_04_0023 + 16537257-16537272,16537515-16537929,16538404-165384... 28 9.8
02_01_0624 - 4681834-4682298,4684250-4684398,4684479-4684557,468... 28 9.8
01_07_0213 - 42028941-42029055,42029444-42029480,42029876-420302... 28 9.8
>10_08_0793 -
20614583-20614897,20615417-20615660,20617713-20617899,
20618508-20618547,20618699-20618775,20618965-20619091
Length = 329
Score = 31.9 bits (69), Expect = 0.60
Identities = 27/86 (31%), Positives = 36/86 (41%)
Frame = +3
Query: 360 KLLTATNLTNHHANYNFTGSTSLTRCYSHTEEANREHLSSTHKHALHRKNLHPPAEPEHR 539
++ T L +HH N RC+S ++ A L H H ++ L P E E R
Sbjct: 98 QIWTDMQLQDHHHECN----GPYCRCHSSSKHAKGSLLLLHHHH--QQQQLQRPNEMETR 151
Query: 540 RIARHERTGRLILQVTTTSDVSIFLP 617
R +TG L Q DVS LP
Sbjct: 152 RAEASTQTGFLRSQGICERDVSSGLP 177
>01_06_0381 +
28878811-28879120,28880189-28880331,28880753-28881532,
28882568-28883968
Length = 877
Score = 31.9 bits (69), Expect = 0.60
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = +3
Query: 447 TEEANREHLSSTHKHALHRKNLHPPAEPEHRRIARHERTGR 569
+ E EH SS +H HR + H + EHR RH+R R
Sbjct: 778 SSEDEHEHRSSKSRHR-HRDDYHYHEDDEHRSSHRHQRDHR 817
Score = 29.9 bits (64), Expect = 2.4
Identities = 18/48 (37%), Positives = 22/48 (45%)
Frame = +3
Query: 399 NYNFTGSTSLTRCYSHTEEANREHLSSTHKHALHRKNLHPPAEPEHRR 542
NY+ S +R H E +R H S HKH L R + EP H R
Sbjct: 729 NYDSEESYKHSR-KKHRSEDSRAHTSDVHKHKLKRHS--KDLEPRHHR 773
>03_05_1101 - 30408944-30410410
Length = 488
Score = 31.1 bits (67), Expect = 1.1
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = -1
Query: 191 YWSPRAPTALSLGCAAS*ETVLWQVQPETST 99
Y+SPR L+LG AS LW ++PE S+
Sbjct: 294 YFSPRQVRELALGLEASNHPFLWVIRPEDSS 324
>05_05_0227 - 23449579-23450459,23450574-23450691
Length = 332
Score = 30.7 bits (66), Expect = 1.4
Identities = 15/29 (51%), Positives = 16/29 (55%)
Frame = -2
Query: 265 RLDGXGGRPTGPPNDEITPPARTADIGAP 179
R DG GGRP+ P E T P R GAP
Sbjct: 231 RGDGGGGRPSAPARREGTDPCRPVLGGAP 259
>01_06_0140 -
26881282-26881290,26882027-26882128,26882816-26882924,
26883712-26883860,26883941-26884043,26884635-26884810,
26885004-26885066,26885258-26885346,26885428-26885538,
26885610-26885744,26886415-26886580,26886788-26886856,
26886943-26887230,26888612-26888866
Length = 607
Score = 29.9 bits (64), Expect = 2.4
Identities = 17/43 (39%), Positives = 21/43 (48%)
Frame = -2
Query: 574 IRRPVRSCLAMRRCSGSAGGCRFFR*SACLCVLDKCSRLASSV 446
+R R A R C GSAG R R SA V+ + RL + V
Sbjct: 31 LRPAARLSFAPRWCGGSAGAARARRESAVTSVISRAPRLDAEV 73
>01_01_0140 + 1265785-1265902,1266424-1266845
Length = 179
Score = 29.1 bits (62), Expect = 4.3
Identities = 20/54 (37%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
Frame = -2
Query: 331 AQVAGGETSA--VAAHPVRENRADRLDGXGGRPTGPPNDEITPPARTADIGAPA 176
A+ AGGE +A A+ NRA R G T D PA A APA
Sbjct: 90 ARAAGGEDAAGGEASRASSANRASRARAAAGEDTVGREDSRASPANRARAAAPA 143
>11_05_0086 + 18964493-18965737,18965896-18966360
Length = 569
Score = 28.7 bits (61), Expect = 5.6
Identities = 15/35 (42%), Positives = 16/35 (45%)
Frame = -2
Query: 235 GPPNDEITPPARTADIGAPALRLHFR*GAPPRRRL 131
GPP D PP T + A L H R PP R L
Sbjct: 82 GPPPDPNQPPPFTNVVSAALLARHRRAAVPPLRAL 116
>07_03_0471 + 18501496-18502104,18503009-18503260,18503367-18503537,
18503693-18503743,18503868-18503960,18504125-18504220,
18504318-18504368,18504452-18504570,18504909-18505017,
18505391-18505513,18505590-18505661,18505963-18506034,
18506125-18506191,18506260-18506402,18506494-18506565,
18506632-18506760,18507317-18507472,18507579-18507692,
18507791-18507889,18507974-18508051,18508402-18508536,
18509081-18509155,18509247-18509361,18509458-18509828,
18509903-18509965,18510049-18510120,18510285-18510413,
18510512-18510628,18510902-18511018
Length = 1289
Score = 28.3 bits (60), Expect = 7.4
Identities = 17/53 (32%), Positives = 22/53 (41%)
Frame = -2
Query: 319 GGETSAVAAHPVRENRADRLDGXGGRPTGPPNDEITPPARTADIGAPALRLHF 161
G A +PV + R+ R G P GPPN P + G P R+ F
Sbjct: 980 GASFGAAGTNPVADKRSGRGKGHSFVPFGPPNGAHKPGVHPS--GYPLPRMPF 1030
>02_01_0759 - 5628913-5630870,5631023-5631047
Length = 660
Score = 28.3 bits (60), Expect = 7.4
Identities = 19/51 (37%), Positives = 23/51 (45%)
Frame = -3
Query: 288 QSARTGQIASTVXEAGRRVRQTTRSRLQHGLPILEPPRSDCTFARVRRLVG 136
Q R+ AS V A VR R R Q P L+ +C F +RRL G
Sbjct: 35 QRKRSLVAASAVAAADCVVRAAKRQRQQRQPPSLDALPDECLFEVLRRLPG 85
>07_03_1544 -
27585581-27585757,27585986-27586091,27586246-27586338,
27587840-27587958,27588486-27588746,27589226-27589515,
27589624-27590152
Length = 524
Score = 27.9 bits (59), Expect = 9.8
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = -2
Query: 334 SAQVAGGETSAVAAHPVRENRADRLDGXGGRPTG 233
S +GG +A AA V ADR+ G G+P G
Sbjct: 62 SPSPSGGRHAAPAAAAVGSKEADRVAGLPGQPAG 95
>06_03_0913 +
25913231-25913609,25913702-25913775,25914400-25914540,
25914834-25914946,25915359-25915491,25916213-25916351,
25916428-25916527,25916906-25916963,25917122-25917199,
25917278-25917376,25917657-25917735,25917826-25917974,
25918529-25918834,25918994-25919032
Length = 628
Score = 27.9 bits (59), Expect = 9.8
Identities = 13/24 (54%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
Frame = -2
Query: 598 SEVVVTCKIRRPVRS--CLAMRRC 533
S++ +TCKI RPVRS C RC
Sbjct: 398 SQLCITCKIVRPVRSKHCSTCDRC 421
>03_04_0023 +
16537257-16537272,16537515-16537929,16538404-16538466,
16538604-16538607
Length = 165
Score = 27.9 bits (59), Expect = 9.8
Identities = 15/47 (31%), Positives = 21/47 (44%)
Frame = +3
Query: 417 STSLTRCYSHTEEANREHLSSTHKHALHRKNLHPPAEPEHRRIARHE 557
+TSL R H + + H HA H + PP H ++ RHE
Sbjct: 5 ATSLNRSIDHKQGGQQRGTPQQHLHAGHAQE-QPPGH-GHGQVQRHE 49
>02_01_0624 -
4681834-4682298,4684250-4684398,4684479-4684557,
4684827-4684925,4685004-4685081,4685231-4685288,
4685814-4685913,4686000-4686008,4686105-4686138,
4686729-4686911,4687099-4687126,4687268-4687380,
4688253-4688459,4689212-4689511
Length = 633
Score = 27.9 bits (59), Expect = 9.8
Identities = 13/24 (54%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
Frame = -2
Query: 598 SEVVVTCKIRRPVRS--CLAMRRC 533
S++ +TCKI RPVRS C RC
Sbjct: 363 SQLCITCKIVRPVRSKHCSTCDRC 386
>01_07_0213 -
42028941-42029055,42029444-42029480,42029876-42030244,
42030332-42031201,42051574-42052891
Length = 902
Score = 27.9 bits (59), Expect = 9.8
Identities = 18/54 (33%), Positives = 26/54 (48%)
Frame = +3
Query: 312 SPPATCADSQDILPPCKLLTATNLTNHHANYNFTGSTSLTRCYSHTEEANREHL 473
S PAT + + P +LLT+ T+H + N T S SH + + RE L
Sbjct: 685 SSPATASAAAASKKP-RLLTSQTTTSHTSTSNATTPRSFDTTSSHQDASFRESL 737
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,153,619
Number of Sequences: 37544
Number of extensions: 499362
Number of successful extensions: 1660
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1660
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2150667972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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