Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_T7_I09
         (848 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0031 - 27183252-27183317,27183542-27184282                       31   1.2  
08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,336...    30   2.0  
10_08_0146 - 15184123-15184968,15185049-15185519,15185606-15185869     30   2.7  
03_06_0399 - 33632811-33633107,33633236-33633385,33633705-336340...    29   3.5  
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121...    29   4.7  
07_01_0674 + 5047503-5047646,5047808-5047901,5048743-5048828,504...    29   6.2  
06_01_0145 + 1092764-1093351                                           28   8.2  

>05_07_0031 - 27183252-27183317,27183542-27184282
          Length = 268

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 15/42 (35%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
 Frame = +3

Query: 579 PXXPXXXPXPPGXPNTSXXPAS-PGLRXXLPXXRSPPXPXXP 701
           P  P   P PP  P T+  P S P      P  ++PP P  P
Sbjct: 115 PSPPPPPPPPPPPPTTTTKPESLPAEADSEPELKAPPPPPPP 156


>08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,
            33643-34147,34250-34358,34436-34548,34619-34806,
            35481-36129,36169-36691,36760-36911,37042-37141,
            37301-37416
          Length = 1530

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 17/57 (29%), Positives = 17/57 (29%)
 Frame = +3

Query: 531  PPXPMDXXXXXXXXXXPXXPXXXPXPPGXPNTSXXPASPGLRXXLPXXRSPPXPXXP 701
            PP P            P  P   P PP        PA P L    P    PP P  P
Sbjct: 1161 PPSPPPATPPPPPPLSPSLPPPPPPPPLPSGPPPQPAPPPLPIQPPPIPPPPVPSSP 1217


>10_08_0146 - 15184123-15184968,15185049-15185519,15185606-15185869
          Length = 526

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +3

Query: 606 PPGXPNTSXXPASPGLRXXLPXXRSPPXP 692
           PP  P T+  P SP L   +P   +PP P
Sbjct: 361 PPSPPATTHPPPSPDLMVQVPAPPAPPTP 389


>03_06_0399 -
           33632811-33633107,33633236-33633385,33633705-33634029,
           33635315-33635982,33636967-33637212,33637405-33637545,
           33637807-33637856,33637943-33638060,33638304-33638910,
           33639339-33639463,33639813-33639869,33639952-33640023,
           33640100-33640232,33640305-33640428,33640522-33640576,
           33640672-33641322
          Length = 1272

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 18/60 (30%), Positives = 21/60 (35%), Gaps = 1/60 (1%)
 Frame = +3

Query: 531 PPXPMDXXXXXXXXXXPXXPXXXPXPPGXPNTSXXPA-SPGLRXXLPXXRSPPXPXXPXT 707
           PP P+D          P  P   P PP   + +   A SP L    P   S P P    T
Sbjct: 53  PPPPLDEETLAQFPSPPTNPSPPPPPPLDADAAAEAAPSPALTSPPPNPSSSPLPPTDTT 112


>10_01_0100 +
           1209424-1209538,1210373-1211073,1211158-1211379,
           1211452-1211878,1212091-1213219,1213623-1213746,
           1214207-1214278,1215480-1215578,1215617-1215640,
           1215704-1215745,1215815-1215895,1215983-1216114,
           1216115-1216196,1216271-1216365,1218499-1218570,
           1218676-1218792,1219379-1219447,1219521-1219587,
           1219886-1220025
          Length = 1269

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 17/55 (30%), Positives = 19/55 (34%), Gaps = 1/55 (1%)
 Frame = +3

Query: 531 PPXPMDXXXXXXXXXXPXXPXXXPXPPGXPNTSXXPA-SPGLRXXLPXXRSPPXP 692
           PP P            P  P   P PP  PN    P  +PG+    P    PP P
Sbjct: 618 PPPPPPPPPLPNHSVLPPPPPPPP-PPSLPNRLVPPPPAPGIGNKFPAPPPPPPP 671


>07_01_0674 +
           5047503-5047646,5047808-5047901,5048743-5048828,
           5049380-5049429,5049517-5049586,5049668-5049749,
           5049867-5050267,5050414-5050941,5051823-5052044
          Length = 558

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 16/57 (28%), Positives = 19/57 (33%)
 Frame = +3

Query: 531 PPXPMDXXXXXXXXXXPXXPXXXPXPPGXPNTSXXPASPGLRXXLPXXRSPPXPXXP 701
           PP P+              P   P PP  P  +    +PG    LP    PP P  P
Sbjct: 208 PPPPLPASSEPVDPSAASLPPLPPPPPPPPKPANIAGAPG----LPLPPPPPPPPGP 260


>06_01_0145 + 1092764-1093351
          Length = 195

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 21/61 (34%), Positives = 22/61 (36%), Gaps = 2/61 (3%)
 Frame = -2

Query: 706 VXGXXGXGGERXXGXSXRRPGDAGHXEV--FGXPGGXGXXXGXXGSXXXXXXXXXSIGXG 533
           V G  G GG+   G    R GD G   V   G  GG G   G  GS           G G
Sbjct: 110 VGGKGGPGGDGGPGGIGGRGGDGGCGGVGGRGRKGGRGGRGGRGGSGGFGGGDGGRGGRG 169

Query: 532 G 530
           G
Sbjct: 170 G 170


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,279,830
Number of Sequences: 37544
Number of extensions: 167504
Number of successful extensions: 785
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 542
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 751
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2362209084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)