Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP08_T7_I09
(848 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U53333-2|AAA96155.1| 299|Caenorhabditis elegans Collagen protei... 36 0.048
M80650-1|AAA27985.1| 298|Caenorhabditis elegans alpha-collagen ... 36 0.048
AF410845-1|AAL76233.1| 299|Caenorhabditis elegans cuticular col... 36 0.048
U41557-2|AAA83301.1| 309|Caenorhabditis elegans Hypothetical pr... 32 0.45
Z71258-1|CAA95780.1| 307|Caenorhabditis elegans Hypothetical pr... 31 1.0
AC024811-5|AAF60775.1| 285|Caenorhabditis elegans Collagen prot... 31 1.0
Z81124-1|CAB03369.1| 312|Caenorhabditis elegans Hypothetical pr... 31 1.4
U53155-5|AAC48270.1| 303|Caenorhabditis elegans Collagen protei... 30 2.4
AF036699-5|AAB88359.1| 290|Caenorhabditis elegans Collagen prot... 30 2.4
AB072926-1|BAB69889.1| 303|Caenorhabditis elegans collagen prot... 30 2.4
AF026211-4|AAB71295.1| 416|Caenorhabditis elegans Collagen prot... 29 4.2
Z77132-3|CAB00860.1| 310|Caenorhabditis elegans Hypothetical pr... 29 5.5
Z77132-2|CAB00858.1| 294|Caenorhabditis elegans Hypothetical pr... 29 5.5
Z98877-14|CAD56615.1| 338|Caenorhabditis elegans Hypothetical p... 28 7.3
Z49131-6|CAA88979.1| 297|Caenorhabditis elegans Hypothetical pr... 28 7.3
Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen... 28 9.6
Z22964-1|CAA80536.1| 1758|Caenorhabditis elegans a2(IV) collagen... 28 9.6
U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein ... 28 9.6
U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein ... 28 9.6
U50312-9|AAA92325.1| 294|Caenorhabditis elegans Collagen protei... 28 9.6
U50312-8|AAA92324.1| 294|Caenorhabditis elegans Collagen protei... 28 9.6
U50312-7|AAA92323.2| 306|Caenorhabditis elegans Collagen protei... 28 9.6
U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV) coll... 28 9.6
>U53333-2|AAA96155.1| 299|Caenorhabditis elegans Collagen protein
34 protein.
Length = 299
Score = 35.5 bits (78), Expect = 0.048
Identities = 19/59 (32%), Positives = 21/59 (35%), Gaps = 2/59 (3%)
Frame = +3
Query: 531 PPXPMDXXXXXXXXXXPXXPXXXPXPPGXPNTSXXPASPGL--RXXLPXXRSPPXPXXP 701
P P + P P P PPG P S P SPGL + P P P P
Sbjct: 133 PQQPCEPITPPPCKPCPQGPPGPPGPPGPPGDSGEPGSPGLPGQDAAPGEPGPKGPPGP 191
>M80650-1|AAA27985.1| 298|Caenorhabditis elegans alpha-collagen
protein.
Length = 298
Score = 35.5 bits (78), Expect = 0.048
Identities = 19/59 (32%), Positives = 21/59 (35%), Gaps = 2/59 (3%)
Frame = +3
Query: 531 PPXPMDXXXXXXXXXXPXXPXXXPXPPGXPNTSXXPASPGL--RXXLPXXRSPPXPXXP 701
P P + P P P PPG P S P SPGL + P P P P
Sbjct: 133 PQQPCEPITPPPWKPCPQGPPGPPGPPGPPGDSGEPGSPGLPGQDAAPGEPGPKGPKGP 191
>AF410845-1|AAL76233.1| 299|Caenorhabditis elegans cuticular
collagen RAM-4 protein.
Length = 299
Score = 35.5 bits (78), Expect = 0.048
Identities = 19/59 (32%), Positives = 21/59 (35%), Gaps = 2/59 (3%)
Frame = +3
Query: 531 PPXPMDXXXXXXXXXXPXXPXXXPXPPGXPNTSXXPASPGL--RXXLPXXRSPPXPXXP 701
P P + P P P PPG P S P SPGL + P P P P
Sbjct: 133 PQQPCEPITPPPCKPCPQGPPGPPGPPGPPGDSGEPGSPGLPGQDAAPGEPGPKGPPGP 191
>U41557-2|AAA83301.1| 309|Caenorhabditis elegans Hypothetical
protein C50F7.5 protein.
Length = 309
Score = 32.3 bits (70), Expect = 0.45
Identities = 18/43 (41%), Positives = 18/43 (41%)
Frame = +3
Query: 579 PXXPXXXPXPPGXPNTSXXPASPGLRXXLPXXRSPPXPXXPXT 707
P P P PPG P T P PG P R PP P P T
Sbjct: 240 PSDPPGPPGPPGPP-TRRPPGPPG-----PPTRRPPGPPGPPT 276
>Z71258-1|CAA95780.1| 307|Caenorhabditis elegans Hypothetical
protein C01H6.1 protein.
Length = 307
Score = 31.1 bits (67), Expect = 1.0
Identities = 12/26 (46%), Positives = 13/26 (50%)
Frame = +3
Query: 579 PXXPXXXPXPPGXPNTSXXPASPGLR 656
P P P PPG P S P +PG R
Sbjct: 98 PTKPVCPPGPPGPPGNSGSPGNPGSR 123
>AC024811-5|AAF60775.1| 285|Caenorhabditis elegans Collagen protein
48 protein.
Length = 285
Score = 31.1 bits (67), Expect = 1.0
Identities = 15/41 (36%), Positives = 16/41 (39%)
Frame = +3
Query: 579 PXXPXXXPXPPGXPNTSXXPASPGLRXXLPXXRSPPXPXXP 701
P P P PG P P PG LP +PP P P
Sbjct: 177 PSGPPGPPGQPGQPGQRGPPGEPG--ALLPGGDAPPGPSGP 215
>Z81124-1|CAB03369.1| 312|Caenorhabditis elegans Hypothetical
protein T21B4.2 protein.
Length = 312
Score = 30.7 bits (66), Expect = 1.4
Identities = 13/41 (31%), Positives = 16/41 (39%)
Frame = +3
Query: 579 PXXPXXXPXPPGXPNTSXXPASPGLRXXLPXXRSPPXPXXP 701
P P P G P P +PG +P + PP P P
Sbjct: 206 PPGPPGGPGNDGQPGGPGNPGAPGAVTEVPGQQGPPGPPGP 246
>U53155-5|AAC48270.1| 303|Caenorhabditis elegans Collagen protein
43 protein.
Length = 303
Score = 29.9 bits (64), Expect = 2.4
Identities = 17/59 (28%), Positives = 19/59 (32%), Gaps = 5/59 (8%)
Frame = +3
Query: 531 PPXPMDXXXXXXXXXXPXXPXXXPXPPGXPNTSXXPASPG-----LRXXLPXXRSPPXP 692
P P + P P P PPG P +PG LP R PP P
Sbjct: 137 PTAPCEPTTPPPCKPCPQGPPGPPGPPGAPGDPGEAGTPGRPGTDATPGLPGPRGPPGP 195
>AF036699-5|AAB88359.1| 290|Caenorhabditis elegans Collagen protein
105 protein.
Length = 290
Score = 29.9 bits (64), Expect = 2.4
Identities = 16/57 (28%), Positives = 19/57 (33%)
Frame = +3
Query: 531 PPXPMDXXXXXXXXXXPXXPXXXPXPPGXPNTSXXPASPGLRXXLPXXRSPPXPXXP 701
P P + P P P P G P P +PG R + PP P P
Sbjct: 124 PQQPCELVTPPPCSPCPAGPPGKPGPQGAPGDIGQPGNPGER-GMDGEPGPPGPTGP 179
>AB072926-1|BAB69889.1| 303|Caenorhabditis elegans collagen
protein.
Length = 303
Score = 29.9 bits (64), Expect = 2.4
Identities = 17/59 (28%), Positives = 19/59 (32%), Gaps = 5/59 (8%)
Frame = +3
Query: 531 PPXPMDXXXXXXXXXXPXXPXXXPXPPGXPNTSXXPASPG-----LRXXLPXXRSPPXP 692
P P + P P P PPG P +PG LP R PP P
Sbjct: 137 PTAPCEPTTPPPCKPCPQGPPGPPGPPGAPGDPGEAGTPGRPGTDATPGLPGPRGPPGP 195
>AF026211-4|AAB71295.1| 416|Caenorhabditis elegans Collagen protein
40 protein.
Length = 416
Score = 29.1 bits (62), Expect = 4.2
Identities = 16/56 (28%), Positives = 18/56 (32%), Gaps = 2/56 (3%)
Frame = +3
Query: 531 PPXPM--DXXXXXXXXXXPXXPXXXPXPPGXPNTSXXPASPGLRXXLPXXRSPPXP 692
PP P D P P P P G P T P +PG + P P
Sbjct: 191 PPGPAGADGNTPSGGGEGPAGPPGPPGPAGNPGTDGAPGNPGAPGQVTETPGTPGP 246
>Z77132-3|CAB00860.1| 310|Caenorhabditis elegans Hypothetical
protein F54D1.3 protein.
Length = 310
Score = 28.7 bits (61), Expect = 5.5
Identities = 11/26 (42%), Positives = 12/26 (46%)
Frame = +3
Query: 579 PXXPXXXPXPPGXPNTSXXPASPGLR 656
P P P PPG P P +PG R
Sbjct: 115 PTCPPGPPGPPGQPGAPGVPGAPGPR 140
>Z77132-2|CAB00858.1| 294|Caenorhabditis elegans Hypothetical
protein F54D1.2 protein.
Length = 294
Score = 28.7 bits (61), Expect = 5.5
Identities = 11/26 (42%), Positives = 12/26 (46%)
Frame = +3
Query: 579 PXXPXXXPXPPGXPNTSXXPASPGLR 656
P P P PPG P P +PG R
Sbjct: 99 PTCPPGPPGPPGQPGAPGVPGAPGPR 124
>Z98877-14|CAD56615.1| 338|Caenorhabditis elegans Hypothetical
protein Y69H2.14 protein.
Length = 338
Score = 28.3 bits (60), Expect = 7.3
Identities = 13/41 (31%), Positives = 15/41 (36%)
Frame = +3
Query: 579 PXXPXXXPXPPGXPNTSXXPASPGLRXXLPXXRSPPXPXXP 701
P P P G P + P +PG P PP P P
Sbjct: 232 PPGPGGPPGQDGHPGDAGAPGAPGQVVAGPGSVGPPGPQGP 272
>Z49131-6|CAA88979.1| 297|Caenorhabditis elegans Hypothetical
protein ZC373.7 protein.
Length = 297
Score = 28.3 bits (60), Expect = 7.3
Identities = 10/24 (41%), Positives = 12/24 (50%)
Frame = +3
Query: 579 PXXPXXXPXPPGXPNTSXXPASPG 650
P P P PPG P + P +PG
Sbjct: 98 PTKPTCPPGPPGPPGPAGQPGTPG 121
>Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen
protein.
Length = 1759
Score = 27.9 bits (59), Expect = 9.6
Identities = 15/57 (26%), Positives = 17/57 (29%)
Frame = +3
Query: 531 PPXPMDXXXXXXXXXXPXXPXXXPXPPGXPNTSXXPASPGLRXXLPXXRSPPXPXXP 701
PP P P P PG P T P +PG + P P P
Sbjct: 354 PPGPPGGGTFNDGAPGPPGLPGRPGNPGPPGTDGYPGAPGPAGPIGNTGGPGLPGYP 410
>Z22964-1|CAA80536.1| 1758|Caenorhabditis elegans a2(IV) collagen
protein.
Length = 1758
Score = 27.9 bits (59), Expect = 9.6
Identities = 15/57 (26%), Positives = 17/57 (29%)
Frame = +3
Query: 531 PPXPMDXXXXXXXXXXPXXPXXXPXPPGXPNTSXXPASPGLRXXLPXXRSPPXPXXP 701
PP P P P PG P T P +PG + P P P
Sbjct: 353 PPGPPGGGTFNDGAPGPPGLPGRPGNPGPPGTDGYPGAPGPAGPIGNTGGPGLPGYP 409
>U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein 2,
isoform a protein.
Length = 1758
Score = 27.9 bits (59), Expect = 9.6
Identities = 15/57 (26%), Positives = 17/57 (29%)
Frame = +3
Query: 531 PPXPMDXXXXXXXXXXPXXPXXXPXPPGXPNTSXXPASPGLRXXLPXXRSPPXPXXP 701
PP P P P PG P T P +PG + P P P
Sbjct: 353 PPGPPGGGTFNDGAPGPPGLPGRPGNPGPPGTDGYPGAPGPAGPIGNTGGPGLPGYP 409
>U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein 2,
isoform b protein.
Length = 1759
Score = 27.9 bits (59), Expect = 9.6
Identities = 15/57 (26%), Positives = 17/57 (29%)
Frame = +3
Query: 531 PPXPMDXXXXXXXXXXPXXPXXXPXPPGXPNTSXXPASPGLRXXLPXXRSPPXPXXP 701
PP P P P PG P T P +PG + P P P
Sbjct: 354 PPGPPGGGTFNDGAPGPPGLPGRPGNPGPPGTDGYPGAPGPAGPIGNTGGPGLPGYP 410
>U50312-9|AAA92325.1| 294|Caenorhabditis elegans Collagen protein
10 protein.
Length = 294
Score = 27.9 bits (59), Expect = 9.6
Identities = 10/24 (41%), Positives = 11/24 (45%)
Frame = +3
Query: 579 PXXPXXXPXPPGXPNTSXXPASPG 650
P P P PPG P P +PG
Sbjct: 99 PTCPPGPPGPPGQPGAPGTPGAPG 122
>U50312-8|AAA92324.1| 294|Caenorhabditis elegans Collagen protein
145 protein.
Length = 294
Score = 27.9 bits (59), Expect = 9.6
Identities = 10/24 (41%), Positives = 11/24 (45%)
Frame = +3
Query: 579 PXXPXXXPXPPGXPNTSXXPASPG 650
P P P PPG P P +PG
Sbjct: 99 PTCPPGPPGPPGQPGAPGTPGAPG 122
>U50312-7|AAA92323.2| 306|Caenorhabditis elegans Collagen protein
144 protein.
Length = 306
Score = 27.9 bits (59), Expect = 9.6
Identities = 10/24 (41%), Positives = 11/24 (45%)
Frame = +3
Query: 579 PXXPXXXPXPPGXPNTSXXPASPG 650
P P P PPG P P +PG
Sbjct: 111 PTCPPGPPGPPGQPGAPGTPGAPG 134
>U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV)
collagen protein.
Length = 1795
Score = 27.9 bits (59), Expect = 9.6
Identities = 15/57 (26%), Positives = 17/57 (29%)
Frame = +3
Query: 531 PPXPMDXXXXXXXXXXPXXPXXXPXPPGXPNTSXXPASPGLRXXLPXXRSPPXPXXP 701
PP P P P PG P T P +PG + P P P
Sbjct: 390 PPGPPGGGTFNDGAPGPPGLPGRPGNPGPPGTDGYPGAPGPAGPIGNTGGPGLPGYP 446
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,885,715
Number of Sequences: 27780
Number of extensions: 114371
Number of successful extensions: 1267
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 421
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1165
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2108493618
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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