Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_T7_I08
         (809 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch...    30   0.34 
SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein ...    29   1.0  
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb...    28   1.8  
SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6 |Schizosacc...    27   3.2  
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T...    27   3.2  
SPBC32C12.02 |ste11|aff1, stex|transcription factor Ste11|Schizo...    26   5.5  
SPAC1250.03 |ubc14||ubiquitin conjugating enzyme Ubc14|Schizosac...    26   5.5  
SPAC458.03 |||nuclear telomere cap complex subunit |Schizosaccha...    26   7.3  
SPAC57A7.07c |||homocysteine methyltransferase |Schizosaccharomy...    25   9.6  
SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces p...    25   9.6  
SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe...    25   9.6  

>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
           Eme1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 30.3 bits (65), Expect = 0.34
 Identities = 28/84 (33%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
 Frame = -1

Query: 710 ATXPAXXXHQPDHQ-IPXFHTPTTPDLTSISINPLTP-Y*KEFAPGLKPPLSSEAPSAYL 537
           ++ P     QP HQ    FHTPT P  T +S    +P    +    +  PLS +A S  L
Sbjct: 121 SSPPNSLSSQPKHQEFHLFHTPTIPRTTQLSSKTSSPIVIPDDNEQVASPLSKKAAS--L 178

Query: 536 TPSSLGMAKGVSPPYFQVNDESQA 465
           T S L   +  SPP   V  +S +
Sbjct: 179 TSSPLKDFQS-SPPLSTVLQKSHS 201


>SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 570

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +2

Query: 104 RNMAKIYQLAVDLGGRERSLNRCREKSSFVVLKNRPDVVVQYG 232
           R +A  Y+  + LGG++ S+    EK  F  + N  DV+ + G
Sbjct: 112 RALADKYKHVLVLGGKDNSVRETAEKYGFKSVINELDVIAKLG 154


>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1254

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +3

Query: 93  KESEETWRRSTNWR*ISEEG 152
           KE  E W R+ NW+  SEEG
Sbjct: 809 KEELEAWTRAFNWQKASEEG 828


>SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 745

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = -2

Query: 259 CYFSTPPFDTVLYDNIRTVLKDNKTALLSASI 164
           CY   P + + L ++I+T+L DN   ++ A++
Sbjct: 168 CYSLDPSYKSQLEEHIKTLLSDNSPIVVPAAL 199


>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 988

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 20/78 (25%), Positives = 34/78 (43%)
 Frame = -2

Query: 358 KVKIADNNLVTHKELALKVSSIIGTRVYVFDPSCYFSTPPFDTVLYDNIRTVLKDNKTAL 179
           K K+ D   V  K   +  +S   T+ +V +   YF   PF+ V+       +K + T  
Sbjct: 608 KKKLKDPEFVIRKYATIHATSDRATKNFVSEAFSYFDMVPFEKVVQ---LLSMKTSDTLF 664

Query: 178 LSASIQASLPSSEIYRQL 125
           +      +  SSEI++ L
Sbjct: 665 VDFVDYWTKSSSEIFKML 682


>SPBC32C12.02 |ste11|aff1, stex|transcription factor
           Ste11|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 468

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
 Frame = -1

Query: 674 HQIPXFHTPTTPDLTSISINPLTP-----Y*KEFAPGLKPPLSSEAPSAYL 537
           H  P    P+TP   + SI+P TP     Y  + A  L  PLS  + +AYL
Sbjct: 295 HCSPIDARPSTPSCPNASISPKTPNTGDHYGFDGAEYLGTPLSVGSTTAYL 345


>SPAC1250.03 |ubc14||ubiquitin conjugating enzyme
           Ubc14|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 155

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -2

Query: 469 KLRALLVVIPRILRSPPPTHPLIEDV 392
           KLR++L  I ++LR P P  PL+  +
Sbjct: 105 KLRSVLEQILQLLREPNPDDPLVASI 130


>SPAC458.03 |||nuclear telomere cap complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 868

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -1

Query: 146 LRDLPPVGRSSPCFFRLLWSLRKILIPYSSQFW 48
           L++L  +G  SPC  RL   L  +++P    FW
Sbjct: 21  LKELQHIGVPSPCNLRLYHELISVIVP---TFW 50


>SPAC57A7.07c |||homocysteine methyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 308

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = -2

Query: 334 LVTHKELALKVSSIIGTRVYVFDPSCY 254
           +V H E  LKV  II T  Y  D S Y
Sbjct: 37  VVKHHEEFLKVCDIISTFTYQLDASIY 63


>SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 390

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -3

Query: 474 ITSFAPY*SSFHAYSAPLLQLTPSSKTSS 388
           + SF PY S F A   P L ++PS+  +S
Sbjct: 302 LQSFHPYESLFSAGQPPSLPISPSTSQNS 330


>SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 488

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +2

Query: 119 IYQLAVDLGGRERSLNRCREKSSFVVLKNRPDVV 220
           ++Q A+ LG   RS  RC  KSSF+    + DVV
Sbjct: 33  LHQQAL-LGRNGRSSKRCSPKSSFIRNSPKIDVV 65


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,852,352
Number of Sequences: 5004
Number of extensions: 56369
Number of successful extensions: 173
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)