Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_T7_I06
         (841 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,287...    32   0.65 
08_01_0364 - 3218309-3218414,3218882-3218941,3219898-3219969,322...    31   0.86 
12_01_0302 - 2286171-2286341,2286747-2286968                           29   4.6  
09_04_0737 - 19822822-19822973,19823069-19823135,19823666-198238...    29   6.1  
02_05_0640 - 30558523-30559027,30559123-30559252,30559388-305598...    29   6.1  

>05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,
            2879715-2879973,2880060-2880346,2880423-2880758,
            2880862-2881003,2881077-2881297,2881379-2881540,
            2881617-2881775,2881860-2882159,2882834-2883097,
            2883133-2883243,2883902-2883988
          Length = 1871

 Score = 31.9 bits (69), Expect = 0.65
 Identities = 23/76 (30%), Positives = 31/76 (40%), Gaps = 3/76 (3%)
 Frame = -3

Query: 716  PPXPXXSXTS-TRSSNPXFHTPTTPDL--TSISINPLTPX*KEFAPGLKPPLSSEAPSAY 546
            P  P  S TS + S     ++PT+P    TS   +P +P     +P   P      PS  
Sbjct: 1761 PTSPSYSPTSPSYSPTSSAYSPTSPAYSPTSPGYSPTSPSYSPSSPSYNPSSVKYTPSHA 1820

Query: 545  LTPSSLGMXKGVSPPY 498
             +PSS       SP Y
Sbjct: 1821 YSPSSPNYYSSTSPTY 1836


>08_01_0364 - 3218309-3218414,3218882-3218941,3219898-3219969,
            3220080-3223195,3223303-3223561,3223665-3223951,
            3224029-3224364,3224463-3224604,3224690-3224910,
            3224990-3225151,3225242-3225400,3225488-3225787,
            3226306-3226569,3227370-3227453
          Length = 1855

 Score = 31.5 bits (68), Expect = 0.86
 Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 5/78 (6%)
 Frame = -3

Query: 716  PPXPXXSXTS-TRSSNPXFHTPTTPDL--TSISINPLTPX*KEFAPGLKPPLSSEAPSAY 546
            P  P  S TS + S     ++PT+P    TS S +P +P     +P   P  +  +PS  
Sbjct: 1699 PTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPNYSPTSPSYNPSSAKYSPSHA 1758

Query: 545  LTPSS--LGMXKGVSPPY 498
             +PSS  L      SP Y
Sbjct: 1759 YSPSSPRLSPYSQTSPNY 1776


>12_01_0302 - 2286171-2286341,2286747-2286968
          Length = 130

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +1

Query: 91  RLQRSRKKHGEDLPTGGRSRRKGEKLE*MQREEQ 192
           RL+R RK +  D+   G  + +GEKLE  + +E+
Sbjct: 57  RLERLRKGYARDVRAAGAMKVRGEKLENWREKEK 90


>09_04_0737 -
           19822822-19822973,19823069-19823135,19823666-19823822,
           19824003-19824177,19824364-19824481,19824676-19824874,
           19824983-19825062,19825141-19825257,19825791-19825961,
           19826121-19826597
          Length = 570

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 18/49 (36%), Positives = 25/49 (51%)
 Frame = +2

Query: 83  FYVDSKGVGRNMARIYQLAVDLGGRERSLNRCREKSSFVVLKNRPDVVV 229
           F+VD  G G +  ++++LAV+ G R      CR     VV     DVVV
Sbjct: 93  FHVDPTGDGSSFLQLHRLAVE-GTRRLLAACCRSGVRTVVYTGSADVVV 140


>02_05_0640 - 30558523-30559027,30559123-30559252,30559388-30559868,
            30560292-30560346,30560537-30560613,30561228-30561315,
            30561490-30561593,30562050-30562231,30562347-30563109,
            30563195-30563438,30564513-30564658,30565158-30565283,
            30565404-30565517,30565595-30565762,30566283-30566528,
            30566605-30566767,30566970-30567064,30567274-30567357,
            30567769-30568055,30568359-30568572,30568923-30569140,
            30569386-30569623,30570312-30571118,30571202-30571301,
            30571694-30571737,30571824-30571973
          Length = 1942

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 20/65 (30%), Positives = 30/65 (46%)
 Frame = -1

Query: 250  PPFDTVLYDNIRTVLKDNKTALLSASIQASLPSSEIYRQLVDPRHVSSDSFGVYVKS*SL 71
            P F T+LY     ++KD      S+     L S+  Y  L+DP   S D+    + +   
Sbjct: 1349 PEFHTLLYAEAARIIKDCWWLADSSRPVKELDSAVGYA-LLDPTWASQDNTSTAIGNIVA 1407

Query: 70   ILHSF 56
            +LHSF
Sbjct: 1408 LLHSF 1412


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,291,411
Number of Sequences: 37544
Number of extensions: 403922
Number of successful extensions: 1205
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1201
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2326952232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)