Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP08_T7_I04
(757 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 107 2e-24
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 87 3e-18
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 82 1e-16
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 77 3e-15
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 75 1e-14
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 73 3e-14
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 73 4e-14
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 68 1e-12
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 67 2e-12
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 65 1e-11
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 63 5e-11
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 62 8e-11
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 62 1e-10
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 58 1e-09
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 54 2e-08
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 54 2e-08
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 54 3e-08
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 52 7e-08
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 49 8e-07
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 47 3e-06
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch... 46 6e-06
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 46 8e-06
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 42 1e-04
SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3 |Schi... 35 0.014
SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom... 34 0.019
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 33 0.058
SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase |Schizosa... 32 0.077
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 32 0.077
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 31 0.23
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 31 0.23
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po... 29 0.72
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po... 29 0.95
SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces p... 28 1.3
SPBC25B2.05 |mis3||rRNA processing protein Mis3|Schizosaccharomy... 28 1.3
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 25 8.8
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 107 bits (257), Expect = 2e-24
Identities = 48/118 (40%), Positives = 79/118 (66%)
Frame = -2
Query: 654 TVVFVQTKRQAHRLHVMLGMLGVKAAELHGALNQPQRLDSLKRFREQQADVLVATDVAAR 475
T++F ++K AH++ V+ G+L + A E+HG+L+Q QR+ +L+ FR+ + + L+ATDVA+R
Sbjct: 507 TIIFFRSKAFAHKMRVIFGLLSLNATEIHGSLSQEQRVRALEDFRDGKCNYLLATDVASR 566
Query: 474 GLDIPGVNTVINFTLPATLEHYIHXXXXXXXXXXXXXXVSLAGEGERNLVKSIVKRAS 301
G+DI G+ VIN+ PAT E Y+H ++LAGEG+R ++K + K +S
Sbjct: 567 GIDIKGIEVVINYEAPATHEVYLHRVGRTARAGRSGRAITLAGEGDRKVLKGVFKNSS 624
Score = 27.5 bits (58), Expect = 2.2
Identities = 19/67 (28%), Positives = 30/67 (44%)
Frame = -1
Query: 202 EEYAEKQMNKMEKQTAKLEVVLKKDEAQPGPQHEPQRQRDWFQTPKQKREEKERLALTTH 23
EE E+++ E+ K E ++K G + + R WFQ+ K K+ K A
Sbjct: 660 EEKQERELKIAERDLKKGENIMKY-----GDEIRSRPARTWFQSEKDKQASKASEAKDKK 714
Query: 22 VEKKKKK 2
K+KK
Sbjct: 715 SLAKRKK 721
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 87.0 bits (206), Expect = 3e-18
Identities = 46/115 (40%), Positives = 67/115 (58%)
Frame = -2
Query: 651 VVFVQTKRQAHRLHVMLGMLGVKAAELHGALNQPQRLDSLKRFREQQADVLVATDVAARG 472
++FV R A ++ +L +L ++ ELH + Q +R++SL RFR + A +LVATDVA+RG
Sbjct: 262 IIFVNRTRTAELIYSILRLLELRVTELHSEMVQRERINSLGRFRAEAAKILVATDVASRG 321
Query: 471 LDIPGVNTVINFTLPATLEHYIHXXXXXXXXXXXXXXVSLAGEGERNLVKSIVKR 307
LDIP V VINF LP + YIH +S+ E + +LV +I R
Sbjct: 322 LDIPSVQLVINFDLPRDPDDYIHRVGRTARAGRSGESISIVTERDVDLVHAIEDR 376
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 81.8 bits (193), Expect = 1e-16
Identities = 39/83 (46%), Positives = 52/83 (62%)
Frame = -2
Query: 651 VVFVQTKRQAHRLHVMLGMLGVKAAELHGALNQPQRLDSLKRFREQQADVLVATDVAARG 472
++F +T RL ++L LG A LHG L+Q RL +L +F+ LVATDVAARG
Sbjct: 289 IIFARTVNDTQRLAILLRTLGFSAIPLHGQLSQSNRLGALNKFKSGARSTLVATDVAARG 348
Query: 471 LDIPGVNTVINFTLPATLEHYIH 403
LDIP V+ VIN+ +P + YIH
Sbjct: 349 LDIPLVDVVINYDIPTDSKAYIH 371
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 77.0 bits (181), Expect = 3e-15
Identities = 33/83 (39%), Positives = 53/83 (63%)
Frame = -2
Query: 651 VVFVQTKRQAHRLHVMLGMLGVKAAELHGALNQPQRLDSLKRFREQQADVLVATDVAARG 472
++FV KR + L +G A LHG+ +Q QR ++++ R + AD+LVATD+A RG
Sbjct: 520 IIFVNLKRNIEAIAKQLNAIGWHAVTLHGSKSQEQRERAIEQLRNKTADILVATDIAGRG 579
Query: 471 LDIPGVNTVINFTLPATLEHYIH 403
+DIP V+ V+N+ + ++E Y H
Sbjct: 580 IDIPNVSLVLNYNMAKSIEDYTH 602
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 74.5 bits (175), Expect = 1e-14
Identities = 41/123 (33%), Positives = 63/123 (51%)
Frame = -2
Query: 654 TVVFVQTKRQAHRLHVMLGMLGVKAAELHGALNQPQRLDSLKRFREQQADVLVATDVAAR 475
T+VF R+ L L V + LH L+Q +RL SL++F+ VLV TDVAAR
Sbjct: 392 TMVFANGIEDIKRITPFLNELKVPSYPLHAQLDQKKRLQSLEKFKNNPKGVLVCTDVAAR 451
Query: 474 GLDIPGVNTVINFTLPATLEHYIHXXXXXXXXXXXXXXVSLAGEGERNLVKSIVKRASKP 295
G+DIP V VI++ +P T + Y+H + + G E + +K + R K
Sbjct: 452 GIDIPSVTHVIHYHVPHTADMYVHRSGRTARANEDGVSILMCGPKELSQLKRLCYRLKKK 511
Query: 294 VKS 286
+++
Sbjct: 512 IET 514
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 73.3 bits (172), Expect = 3e-14
Identities = 38/83 (45%), Positives = 51/83 (61%)
Frame = -2
Query: 651 VVFVQTKRQAHRLHVMLGMLGVKAAELHGALNQPQRLDSLKRFREQQADVLVATDVAARG 472
++FV K++A R+ L +HG ++Q RL +L F+ + VLVATDVAARG
Sbjct: 421 LIFVLYKKEAARVEGTLARK-YNVVGIHGDMSQGARLQALNDFKSGKCPVLVATDVAARG 479
Query: 471 LDIPGVNTVINFTLPATLEHYIH 403
LDIP V VIN T P T+E Y+H
Sbjct: 480 LDIPKVQLVINVTFPLTIEDYVH 502
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 72.9 bits (171), Expect = 4e-14
Identities = 36/84 (42%), Positives = 51/84 (60%)
Frame = -2
Query: 654 TVVFVQTKRQAHRLHVMLGMLGVKAAELHGALNQPQRLDSLKRFREQQADVLVATDVAAR 475
T++FV+TKR A L L A +HG Q +R +L+ FR + ++VAT VA+R
Sbjct: 433 TLIFVETKRMADTLTDYLLNSNFPATSIHGDRTQRERERALELFRSGRTSIMVATAVASR 492
Query: 474 GLDIPGVNTVINFTLPATLEHYIH 403
GLDIP V VIN+ LP ++ Y+H
Sbjct: 493 GLDIPNVTHVINYDLPTDIDDYVH 516
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 68.1 bits (159), Expect = 1e-12
Identities = 34/83 (40%), Positives = 50/83 (60%)
Frame = -2
Query: 651 VVFVQTKRQAHRLHVMLGMLGVKAAELHGALNQPQRLDSLKRFREQQADVLVATDVAARG 472
V+FVQ +A L+ L + +HG L Q +R ++L +FR+ + VL+ATD+ ARG
Sbjct: 292 VIFVQDIERAKALYTELLFDEIHVGVIHGELPQAKREEALAKFRKGEIWVLIATDLLARG 351
Query: 471 LDIPGVNTVINFTLPATLEHYIH 403
+D GV VINF P ++ YIH
Sbjct: 352 IDFHGVKMVINFDFPQSVHSYIH 374
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 67.3 bits (157), Expect = 2e-12
Identities = 31/84 (36%), Positives = 52/84 (61%)
Frame = -2
Query: 654 TVVFVQTKRQAHRLHVMLGMLGVKAAELHGALNQPQRLDSLKRFREQQADVLVATDVAAR 475
T+VFV TK + +L G ++++G+L+Q RL+ + FR + ++LV TDVA+R
Sbjct: 349 TLVFVPTKHHVEYVSELLVQAGYSVSKIYGSLDQEARLNEINNFRLGKTNLLVVTDVASR 408
Query: 474 GLDIPGVNTVINFTLPATLEHYIH 403
G+DIP + VIN+ P + ++H
Sbjct: 409 GIDIPLLANVINYDFPPQPKVFVH 432
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 64.9 bits (151), Expect = 1e-11
Identities = 31/83 (37%), Positives = 48/83 (57%)
Frame = -2
Query: 651 VVFVQTKRQAHRLHVMLGMLGVKAAELHGALNQPQRLDSLKRFREQQADVLVATDVAARG 472
V+F T+R+ L L + +HG ++Q QR + FR + +L+ TD+ ARG
Sbjct: 262 VIFCNTRRKVDWLTEQLTERDFTVSSMHGDMDQAQRDTLMHEFRTGSSRILITTDLLARG 321
Query: 471 LDIPGVNTVINFTLPATLEHYIH 403
+D+ V+ VIN+ LPA E+YIH
Sbjct: 322 IDVQQVSLVINYDLPANRENYIH 344
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 62.9 bits (146), Expect = 5e-11
Identities = 31/83 (37%), Positives = 46/83 (55%)
Frame = -2
Query: 651 VVFVQTKRQAHRLHVMLGMLGVKAAELHGALNQPQRLDSLKRFREQQADVLVATDVAARG 472
++F TKR A + L G A +HG Q +R L FR ++ ++VATDVA+RG
Sbjct: 373 LIFTGTKRVADDITRFLRQDGWPALAIHGDKAQDERDWVLNEFRTGKSPIMVATDVASRG 432
Query: 471 LDIPGVNTVINFTLPATLEHYIH 403
+D+ G+ V N+ P E Y+H
Sbjct: 433 IDVKGITHVFNYDFPGNTEDYVH 455
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 62.1 bits (144), Expect = 8e-11
Identities = 30/83 (36%), Positives = 49/83 (59%)
Frame = -2
Query: 651 VVFVQTKRQAHRLHVMLGMLGVKAAELHGALNQPQRLDSLKRFREQQADVLVATDVAARG 472
V+FV++ +A+ L +L + +HG L Q +R+ K F++ + VATDV RG
Sbjct: 299 VIFVKSVSRANELDRLLRECNFPSICIHGGLPQEERIKRYKAFKDFDKRICVATDVFGRG 358
Query: 471 LDIPGVNTVINFTLPATLEHYIH 403
+DI VN VIN+ +P + + Y+H
Sbjct: 359 IDIERVNIVINYDMPDSPDSYLH 381
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 61.7 bits (143), Expect = 1e-10
Identities = 29/83 (34%), Positives = 48/83 (57%)
Frame = -2
Query: 651 VVFVQTKRQAHRLHVMLGMLGVKAAELHGALNQPQRLDSLKRFREQQADVLVATDVAARG 472
V+F ++R+ L + +HG + Q +R ++ FR+ + VL+ TD+ ARG
Sbjct: 264 VIFCNSRRKVDWLTEKMREANFTVTSMHGEMPQKERDAIMQDFRQGNSRVLICTDIWARG 323
Query: 471 LDIPGVNTVINFTLPATLEHYIH 403
+D+ V+ VIN+ LPA E+YIH
Sbjct: 324 IDVQQVSLVINYDLPANRENYIH 346
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 58.4 bits (135), Expect = 1e-09
Identities = 29/84 (34%), Positives = 45/84 (53%)
Frame = -2
Query: 654 TVVFVQTKRQAHRLHVMLGMLGVKAAELHGALNQPQRLDSLKRFREQQADVLVATDVAAR 475
T+VFV + A L L G + +HG +Q R ++ ++ DVL+AT V AR
Sbjct: 671 TLVFVDRQESADALLSDLMKRGYTSNSIHGGKDQHDRDSTISDYKAGVFDVLIATSVVAR 730
Query: 474 GLDIPGVNTVINFTLPATLEHYIH 403
GLD+ + V+N+ P +E Y+H
Sbjct: 731 GLDVKSLQLVVNYDCPNHMEDYVH 754
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 54.4 bits (125), Expect = 2e-08
Identities = 24/57 (42%), Positives = 33/57 (57%)
Frame = -2
Query: 573 LHGALNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVINFTLPATLEHYIH 403
LH L QR + FR+ Q+ +L ATDV ARG+D P + V+ T P+ + YIH
Sbjct: 323 LHSGLTTAQRRSITESFRKCQSGILFATDVVARGMDFPNITQVVQITGPSNTDDYIH 379
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 54.0 bits (124), Expect = 2e-08
Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 2/86 (2%)
Frame = -2
Query: 654 TVVFVQTKRQAHRLHVMLGML--GVKAAELHGALNQPQRLDSLKRFREQQADVLVATDVA 481
T+VF+ + +Q ++ + G+ LHG Q R + +F + VL TD+
Sbjct: 286 TIVFLSSCKQVRFVYETFRRMRPGISLLHLHGKQKQTTRTEVTAKFTSSRHVVLFCTDIV 345
Query: 480 ARGLDIPGVNTVINFTLPATLEHYIH 403
ARGLD P V+ VI P ++ YIH
Sbjct: 346 ARGLDFPAVDWVIQLDAPEDVDTYIH 371
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 53.6 bits (123), Expect = 3e-08
Identities = 25/83 (30%), Positives = 44/83 (53%)
Frame = -2
Query: 651 VVFVQTKRQAHRLHVMLGMLGVKAAELHGALNQPQRLDSLKRFREQQADVLVATDVAARG 472
+VF+ + + +L + + +LHG Q +R ++ F + +L+ T+VAARG
Sbjct: 340 IVFMSSCASVKYMAELLNYIDLPVLDLHGKQKQQRRTNTFFEFCNAEKGILLCTNVAARG 399
Query: 471 LDIPGVNTVINFTLPATLEHYIH 403
LDIP V+ ++ + P YIH
Sbjct: 400 LDIPAVDWIVQYDPPDDPRDYIH 422
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 52.4 bits (120), Expect = 7e-08
Identities = 24/60 (40%), Positives = 38/60 (63%), Gaps = 3/60 (5%)
Frame = -2
Query: 573 LHGALNQPQRLDSLKRFREQQ---ADVLVATDVAARGLDIPGVNTVINFTLPATLEHYIH 403
LHG+L+Q R +L F + + +L+ TDVAARGLD+P V+ V+ + P + + Y+H
Sbjct: 473 LHGSLSQQIRTSTLNLFSSSEDSGSHILLCTDVAARGLDLPNVDLVVQYDAPFSTDDYLH 532
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 48.8 bits (111), Expect = 8e-07
Identities = 26/84 (30%), Positives = 37/84 (44%)
Frame = -2
Query: 654 TVVFVQTKRQAHRLHVMLGMLGVKAAELHGALNQPQRLDSLKRFREQQADVLVATDVAAR 475
+++F + + L + LG H + Q R FR LV +D+ R
Sbjct: 284 SIIFCNSTNRVELLAKKITELGYSCFYSHAKMLQSHRNRVFHNFRNGVCRNLVCSDLLTR 343
Query: 474 GLDIPGVNTVINFTLPATLEHYIH 403
G+DI VN VINF P E Y+H
Sbjct: 344 GIDIQAVNVVINFDFPKNAETYLH 367
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 47.2 bits (107), Expect = 3e-06
Identities = 32/131 (24%), Positives = 58/131 (44%), Gaps = 8/131 (6%)
Frame = -2
Query: 645 FVQTKRQAHRLHVMLGML------GVKAAELHGALNQPQRLDSLKRFREQQADVLVATDV 484
FV++ A RLH +L ++ +L++ +R + RF ++LV +D+
Sbjct: 437 FVKSNEAAARLHRLLELIHESLNQSFSCGLFTSSLSRDERKKIISRFATGDLNLLVCSDL 496
Query: 483 AARGLDIPGVNTVINFTLPATLEHYIHXXXXXXXXXXXXXXVSLAGEGERNLVKSIVK-- 310
ARG+D+ VIN+ P ++ Y+H +L E + +VK
Sbjct: 497 MARGIDVANTQNVINYDPPLSVRSYVHRIGRTARAGREGFAWTLVQSHEGHHFSKLVKQL 556
Query: 309 RASKPVKSRQI 277
R + P+K +I
Sbjct: 557 RRTLPIKRIKI 567
>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1374
Score = 46.0 bits (104), Expect = 6e-06
Identities = 30/95 (31%), Positives = 50/95 (52%), Gaps = 12/95 (12%)
Frame = -2
Query: 654 TVVFVQTKRQAHRLHVMLGMLG---VKAAEL--HGALNQPQ-------RLDSLKRFREQQ 511
TV+FV+ K A L + + L ++A HG +Q + + D+L +F+ +
Sbjct: 364 TVIFVERKATAFTLSLFMKTLNLPNIRAHSFIGHGPSDQGEFSMTFRRQKDTLHKFKTGK 423
Query: 510 ADVLVATDVAARGLDIPGVNTVINFTLPATLEHYI 406
+VL+AT VA G+D+P N VI F + T+ Y+
Sbjct: 424 YNVLIATAVAEEGIDVPSCNLVIRFNICRTVTQYV 458
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 45.6 bits (103), Expect = 8e-06
Identities = 26/76 (34%), Positives = 40/76 (52%)
Frame = -2
Query: 654 TVVFVQTKRQAHRLHVMLGMLGVKAAELHGALNQPQRLDSLKRFREQQADVLVATDVAAR 475
+++F + K A + + G A L G L QR + FR + VLV T+V AR
Sbjct: 355 SIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIAR 414
Query: 474 GLDIPGVNTVINFTLP 427
G+D+ VN V+N+ +P
Sbjct: 415 GIDVSQVNLVVNYDMP 430
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 41.5 bits (93), Expect = 1e-04
Identities = 25/101 (24%), Positives = 44/101 (43%), Gaps = 1/101 (0%)
Frame = -2
Query: 573 LHGALNQPQRLDSLKRFREQ-QADVLVATDVAARGLDIPGVNTVINFTLPATLEHYIHXX 397
LHG Q R + ++F++ + VL TD+A+RGLDIP V+ V+ P + + H
Sbjct: 288 LHGQQVQSNRSRNFEKFKKSNKKTVLFTTDIASRGLDIPNVDFVLQLDPPLDPKSFSHRC 347
Query: 396 XXXXXXXXXXXXVSLAGEGERNLVKSIVKRASKPVKSRQIP 274
+ L +G + +++ P+ P
Sbjct: 348 GRAGRAGRAGVAIVLLNDGREEEYEELLRVRKVPITRIDTP 388
>SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 606
Score = 34.7 bits (76), Expect = 0.014
Identities = 20/71 (28%), Positives = 35/71 (49%)
Frame = -2
Query: 654 TVVFVQTKRQAHRLHVMLGMLGVKAAELHGALNQPQRLDSLKRFREQQADVLVATDVAAR 475
T+VF + ++ LG+ A L G N +R ++ FR+++ VLV V
Sbjct: 268 TLVFCINVEHSLKVCNAFRKLGIDARALFGETNDSERETLIQDFRKKKFPVLVNCMVLTE 327
Query: 474 GLDIPGVNTVI 442
G DIP ++ ++
Sbjct: 328 GTDIPNIDCLM 338
>SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 834
Score = 34.3 bits (75), Expect = 0.019
Identities = 15/58 (25%), Positives = 33/58 (56%)
Frame = -2
Query: 594 LGVKAAELHGALNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVINFTLPAT 421
+G A ++Q + +++K+F++ + + L+AT + GLDI V+ +I + A+
Sbjct: 465 IGQSAVRKAAGMSQKLQNETVKQFQKGEVNTLIATSIGEEGLDIGEVDMIICYDASAS 522
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 32.7 bits (71), Expect = 0.058
Identities = 17/72 (23%), Positives = 37/72 (51%)
Frame = -2
Query: 651 VVFVQTKRQAHRLHVMLGMLGVKAAELHGALNQPQRLDSLKRFREQQADVLVATDVAARG 472
++FV + +RL + L G+K+ L+ L RL L+++ + +++ATD +
Sbjct: 264 LIFVNEINRCYRLKLFLEQFGLKSLVLNSELPVNSRLHILEQYNKGLYQIIIATDESGMM 323
Query: 471 LDIPGVNTVINF 436
+I + ++F
Sbjct: 324 GEIEELENNVDF 335
Score = 32.3 bits (70), Expect = 0.077
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = -2
Query: 480 ARGLDIPGVNTVINFTLPATLEHYIH 403
ARGLD V V+NF +P+ + YIH
Sbjct: 387 ARGLDFENVACVLNFDMPSNTKSYIH 412
>SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 32.3 bits (70), Expect = 0.077
Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Frame = -2
Query: 654 TVVFVQTKRQAHRLHVMLGM-LGVKAAELHGALNQPQRLDSLKRFREQQADVLVATDVAA 478
T ++ T A R V + +G + +NQ Q+ +++ +FR + LVAT +
Sbjct: 483 TAEYITTTLLAIRPMVRASLFIGQANSAYSTGMNQMQQKETIDQFRAGVINTLVATSIGE 542
Query: 477 RGLDIPGVNTVI 442
GLDI + +I
Sbjct: 543 EGLDIGDTDMII 554
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 32.3 bits (70), Expect = 0.077
Identities = 18/61 (29%), Positives = 29/61 (47%)
Frame = -2
Query: 591 GVKAAELHGALNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVINFTLPATLEH 412
G+KA H L + +R ++ ++VAT G+D V VI+ + P +LE
Sbjct: 767 GLKAWHYHAGLEKVERQRIQNEWQSGSYKIIVATIAFGMGVDKGDVRFVIHHSFPKSLEG 826
Query: 411 Y 409
Y
Sbjct: 827 Y 827
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 30.7 bits (66), Expect = 0.23
Identities = 21/89 (23%), Positives = 41/89 (46%), Gaps = 7/89 (7%)
Frame = -2
Query: 651 VVFVQTKRQAHRLHVMLGMLGVKAAELH-----GALNQPQRLDSLKRFREQQAD--VLVA 493
++F +TK+ +H L + A H G ++ +R + FR +++A
Sbjct: 1419 IIFCRTKKDVEYIHRRLHQSDL-FAHTHVTIYTGDVSDEERQMNFDAFRNANGKTRIMIA 1477
Query: 492 TDVAARGLDIPGVNTVINFTLPATLEHYI 406
T G++ GV V+++ LPA+ Y+
Sbjct: 1478 TKAFGLGINYMGVRLVVHYGLPASSMDYV 1506
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 30.7 bits (66), Expect = 0.23
Identities = 21/89 (23%), Positives = 41/89 (46%), Gaps = 7/89 (7%)
Frame = -2
Query: 651 VVFVQTKRQAHRLHVMLGMLGVKAAELH-----GALNQPQRLDSLKRFREQQAD--VLVA 493
++F +TK+ +H L + A H G ++ +R + FR +++A
Sbjct: 1419 IIFCRTKKDVEYIHRRLHQSDL-FAHTHVTIYTGDVSDEERQMNFDAFRNANGKTRIMIA 1477
Query: 492 TDVAARGLDIPGVNTVINFTLPATLEHYI 406
T G++ GV V+++ LPA+ Y+
Sbjct: 1478 TKAFGLGINYMGVRLVVHYGLPASSMDYV 1506
>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1057
Score = 29.1 bits (62), Expect = 0.72
Identities = 14/52 (26%), Positives = 28/52 (53%)
Frame = -1
Query: 202 EEYAEKQMNKMEKQTAKLEVVLKKDEAQPGPQHEPQRQRDWFQTPKQKREEK 47
E+ +EK + K+E + K + L ++E + + +R+ W Q+PK + K
Sbjct: 999 EDLSEKDLKKIEAKATKKKK-LTRNEIKAKERRARERELAWLQSPKGTEKPK 1049
>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 474
Score = 28.7 bits (61), Expect = 0.95
Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Frame = -1
Query: 190 EKQMNKMEKQTAKLEVVL-KKDEAQPGPQHEPQRQRDWFQTPKQKREEKERLALTTHVEK 14
E ++N +E + V +KDE + + E +R+++ + K+K+E+KE+ EK
Sbjct: 416 EAEVNGVEDSKKRKSVESSEKDEDEAAKKEEKRRKKEAKKEKKEKKEKKEK------KEK 469
Query: 13 KKK 5
KKK
Sbjct: 470 KKK 472
>SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 723
Score = 28.3 bits (60), Expect = 1.3
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = -1
Query: 202 EEYAEKQMNKMEKQTAKLEVVLKKDEAQPGPQHEPQRQRD 83
E ++ K E+ AK + L +DE +P P H RD
Sbjct: 404 ERVTALELQKSERPLAKQQNALLEDEGKPTPSHTLLHNRD 443
>SPBC25B2.05 |mis3||rRNA processing protein Mis3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 327
Score = 28.3 bits (60), Expect = 1.3
Identities = 18/59 (30%), Positives = 30/59 (50%)
Frame = -1
Query: 178 NKMEKQTAKLEVVLKKDEAQPGPQHEPQRQRDWFQTPKQKREEKERLALTTHVEKKKKK 2
+K++ + E LKK+E + + E + Q Q K+K +EKER+ E+ KK
Sbjct: 269 SKLDLEIESGEYFLKKEEKERKKRAEKKEQ----QKEKKKEKEKERMKAFIPPEESSKK 323
>SPAC17C9.03 |tif471||translation initiation factor eIF4G
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1403
Score = 25.4 bits (53), Expect = 8.8
Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = -1
Query: 193 AEKQMNKMEKQTAKLEVVLK-KDEAQPGPQHEPQRQRDWFQTPKQKREEKERLALTTHVE 17
AE++ + ++ AK E K K EA+ + E + + KRE +E++ T
Sbjct: 637 AEEKAKREAEEKAKREAEEKAKREAEENAKREAEEKAKREAEENAKREAEEKVKRETEEN 696
Query: 16 KKKK 5
K+K
Sbjct: 697 AKRK 700
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,023,360
Number of Sequences: 5004
Number of extensions: 32914
Number of successful extensions: 139
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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