Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_T7_I04
         (757 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       69   4e-14
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    24   1.3  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   3.1  
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    22   7.1  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   9.4  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 69.3 bits (162), Expect = 4e-14
 Identities = 35/84 (41%), Positives = 51/84 (60%)
 Frame = -2

Query: 654 TVVFVQTKRQAHRLHVMLGMLGVKAAELHGALNQPQRLDSLKRFREQQADVLVATDVAAR 475
           T+VFV+ K++A  + V L         +HG   Q QR ++L  F+  +  +LVAT VAAR
Sbjct: 454 TLVFVEMKKKADFIAVFLSENNYPTTSIHGDRLQRQREEALADFKSGRMSILVATAVAAR 513

Query: 474 GLDIPGVNTVINFTLPATLEHYIH 403
           GLDI  V+ VIN+ LP  ++ Y+H
Sbjct: 514 GLDIKNVSHVINYDLPKGIDEYVH 537


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +2

Query: 329 RFLSPSPASETDTPARPALAVRPTLCI 409
           R+LS +  S T T  RPA +   TL +
Sbjct: 828 RYLSAAATSSTSTSPRPASSTAATLVL 854


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -1

Query: 106 HEPQRQRDWFQTPKQKREEKERL 38
           H P +Q+   Q  +Q+R+E+ RL
Sbjct: 160 HRPYQQQQQQQQRQQQRQEERRL 182



 Score = 21.8 bits (44), Expect = 7.1
 Identities = 11/49 (22%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = -1

Query: 187  KQMNKMEKQTAKLEVVLKKDEAQPGPQH-EPQRQRDWFQTPKQKREEKE 44
            +Q    ++Q  + +   ++   QP  Q  +PQ+Q+   Q  + ++++KE
Sbjct: 1501 QQQQPQQQQQQQQQQQPQQQSQQPQQQQPQPQQQQQQQQQQQPQQQQKE 1549


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 12/52 (23%), Positives = 24/52 (46%)
 Frame = -1

Query: 214 QFSXEEYAEKQMNKMEKQTAKLEVVLKKDEAQPGPQHEPQRQRDWFQTPKQK 59
           Q S  E   K+M +M ++  +      +  +Q   Q + Q+Q+D  Q  + +
Sbjct: 58  QHSKNEQQRKEMEQMREREREQREHSDRVTSQQQQQQQQQQQQDQQQQQQSR 109


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -2

Query: 306  ASKPVKSRQIPPDIVAKXQGETDQTRTGD 220
            A +P  S+++PP+ +     E D+TR  D
Sbjct: 1222 AEEPT-SQKVPPNQLTHEASELDKTRRYD 1249


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,971
Number of Sequences: 438
Number of extensions: 2445
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23753925
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)