Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP08_T7_I03
(763 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po... 142 4e-35
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF... 33 0.059
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam... 29 0.72
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 29 0.96
SPBC8E4.01c ||SPBP4G3.01|inorganic phosphate transporter |Schizo... 27 2.2
SPAC3G6.06c |rad2|fen1|FEN-1 endonuclease|Schizosaccharomyces po... 27 2.9
SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyc... 26 5.1
SPAC56F8.07 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 26 6.7
SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces ... 26 6.7
SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces ... 25 8.9
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc... 25 8.9
>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 474
Score = 142 bits (345), Expect = 4e-35
Identities = 61/107 (57%), Positives = 87/107 (81%)
Frame = -3
Query: 659 IKPLEGLLIAHKRILSKTALLMLFAXGAKVLLPGILRYEDGIEVDQEIVIVTTKGEAVAL 480
I+PLE LL+ +KRI+ K + + GAK+++PG+LRYE GIEV++EIV++TTKGEA+A+
Sbjct: 261 IRPLESLLVGYKRIVVKDSAVNAICYGAKLMIPGLLRYEAGIEVNEEIVLITTKGEAIAV 320
Query: 479 AVALMTTSTMASCDHGVAAKLKRVIMERDTYPRKWGLGPKASQKKIL 339
+A M+T +++CDHGV AK+KR IMERD YPR+WGLGP++ +KK L
Sbjct: 321 GIAQMSTVELSTCDHGVVAKVKRCIMERDVYPRRWGLGPQSMKKKTL 367
Score = 52.4 bits (120), Expect = 7e-08
Identities = 19/33 (57%), Positives = 27/33 (81%)
Frame = -1
Query: 352 RKKSSYXQGKLDKYGKPNENTPKEWLNSYVNYN 254
+KK+ +GKLDKYG+PNENTP +W SY++Y+
Sbjct: 363 KKKTLKKEGKLDKYGRPNENTPADWSKSYIDYS 395
Score = 46.8 bits (106), Expect = 3e-06
Identities = 25/63 (39%), Positives = 37/63 (58%), Gaps = 4/63 (6%)
Frame = -2
Query: 762 SGIQGEKEGMVTMHDILDAQWSYETTKTRLIFVENQTSGRPPDC----SQKDIIKDSAVN 595
SG E + +VTMHD+LDAQW Y+ T+ + RP + ++ ++KDSAVN
Sbjct: 226 SGCLSENDDIVTMHDVLDAQWIYDNTRDESYL---RRVIRPLESLLVGYKRIVVKDSAVN 282
Query: 594 AVC 586
A+C
Sbjct: 283 AIC 285
>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
Length = 918
Score = 32.7 bits (71), Expect = 0.059
Identities = 26/116 (22%), Positives = 54/116 (46%), Gaps = 3/116 (2%)
Frame = -1
Query: 367 DRKPHRKKSSYXQGKLDKYGKPNENTPKEWLNSYVNYNVKKEPENGDGVEEGSRKRTAST 188
D + +S K D E++ +E +S + + ++E E+ + E +K+ +
Sbjct: 18 DSSEENRLTSSRLKKQDDSSSEEESSEEESASSSESESSEEESESEESEVEVPKKK--AV 75
Query: 187 ANAEDPDVSIEVKQEXXXXXXKRDSEAPAEADATMDT---SESPETAEQPADDSVR 29
A +ED + E +E + DSE E+++ ++ SE +E+ +D+S R
Sbjct: 76 AASEDSESDSESSEEEEETESEEDSEVSDESESESESESESEEESESEEESDESER 131
>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
Mam3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 29.1 bits (62), Expect = 0.72
Identities = 21/82 (25%), Positives = 42/82 (51%), Gaps = 6/82 (7%)
Frame = +1
Query: 394 SRSIMTRLSFAATP*SH-EAIVDVVIRATANATASPLVVTITISWSTSMPS--SYLKIPG 564
S +T +S +T ++ + VD+ TA++T T+S+ST +P+ S L P
Sbjct: 213 SSETLTSVSITSTESAYTSSSVDIAASTTASSTLPVSTSEATVSFSTDIPATPSTLSSPA 272
Query: 565 NST---LAPXANSINSAVFDNI 621
+S+ L ++++ +VF +
Sbjct: 273 SSSSSYLVETSSTLTDSVFTTV 294
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 28.7 bits (61), Expect = 0.96
Identities = 15/65 (23%), Positives = 29/65 (44%)
Frame = -1
Query: 238 ENGDGVEEGSRKRTASTANAEDPDVSIEVKQEXXXXXXKRDSEAPAEADATMDTSESPET 59
E + VE+ K+ S+ ++ D + S + E DSE+ + ++ P +
Sbjct: 186 EEEEVVEKTEEKKEGSSESSSDSESSSDSSSESGDSDSSSDSESESSSEDEKKRKAEPAS 245
Query: 58 AEQPA 44
E+PA
Sbjct: 246 EERPA 250
>SPBC8E4.01c ||SPBP4G3.01|inorganic phosphate transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 572
Score = 27.5 bits (58), Expect = 2.2
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = -1
Query: 289 PKEWLNSYVNYNVKKEPENGDGVEEGSRKRTASTANAEDPDVSIEVKQ 146
PK + N+ N+KK +GD + R A+ A+A D +V KQ
Sbjct: 275 PKAFFNTDDEDNMKKSSSHGDSEVVEASDRYANQADAADAEVDNIEKQ 322
>SPAC3G6.06c |rad2|fen1|FEN-1 endonuclease|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 380
Score = 27.1 bits (57), Expect = 2.9
Identities = 11/43 (25%), Positives = 26/43 (60%)
Frame = -1
Query: 331 QGKLDKYGKPNENTPKEWLNSYVNYNVKKEPENGDGVEEGSRK 203
QG+LD + KP ++PK+ +++ + K++ ++ G E ++
Sbjct: 338 QGRLDSFFKPVPSSPKKPVDTKSKGSAKRKRDSNKGGESKKKR 380
>SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 682
Score = 26.2 bits (55), Expect = 5.1
Identities = 25/99 (25%), Positives = 37/99 (37%), Gaps = 9/99 (9%)
Frame = -1
Query: 322 LDKYGKP--NENTPKEWLNSYVNYNV-------KKEPENGDGVEEGSRKRTASTANAEDP 170
+D+YG+P + KE Y N E + + V S K T S ++
Sbjct: 65 VDRYGRPLNQDKATKEIDRLYELENEGSSSSSESSEITDNEEVASASSKSTKSEELTDEE 124
Query: 169 DVSIEVKQEXXXXXXKRDSEAPAEADATMDTSESPETAE 53
EV SE+ E+DA +T PE +E
Sbjct: 125 SEDEEVYDPARGEGIISTSESSDESDAESETEAQPEISE 163
>SPAC56F8.07 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 183
Score = 25.8 bits (54), Expect = 6.7
Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Frame = +2
Query: 239 RFFLNIIVD-VTV*PFFWCVLIWFA-IFVKFPLXV*GFFSVRLSVRDPIFWGTCLVPL*H 412
RF+L+ D + + P W ++ + +F + P + +R RDP+ W L+ H
Sbjct: 62 RFYLSTYEDPILLIPAPWKTALFSSELFFQVPFFIWVSLRLRKKARDPVLWVAILIYGVH 121
Query: 413 A 415
A
Sbjct: 122 A 122
>SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 599
Score = 25.8 bits (54), Expect = 6.7
Identities = 18/75 (24%), Positives = 32/75 (42%), Gaps = 4/75 (5%)
Frame = -1
Query: 247 KEPENGDGVEEGSRKRTASTANAEDPDVSIEVKQEXXXXXXKRDSEAPAEADA----TMD 80
KE E DG+++ S + + + E P+ ++++EA E A +
Sbjct: 282 KESETIDGIDDKSLRSSTREVSVESPNEDSVNDDSSSDVSDEKETEAKHEIRAPAIIVRE 341
Query: 79 TSESPETAEQPADDS 35
TS P TA +D+
Sbjct: 342 TSSHPSTAVPSENDT 356
>SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 797
Score = 25.4 bits (53), Expect = 8.9
Identities = 11/37 (29%), Positives = 18/37 (48%)
Frame = -1
Query: 274 NSYVNYNVKKEPENGDGVEEGSRKRTASTANAEDPDV 164
N YV+ N E +GD + E R R + ++ D+
Sbjct: 3 NEYVDMNSSSEDSDGDSILEEGRLRPSFRGQQKERDM 39
>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 732
Score = 25.4 bits (53), Expect = 8.9
Identities = 7/19 (36%), Positives = 13/19 (68%)
Frame = +1
Query: 283 LLVCSHLVCHICQVSLXCM 339
+L C+H +CH+C + L +
Sbjct: 93 VLPCNHRMCHVCALRLRAL 111
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,801,311
Number of Sequences: 5004
Number of extensions: 54348
Number of successful extensions: 188
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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