Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP08_T7_I03
(763 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_03_0094 + 14378953-14380728 139 2e-33
07_03_1408 - 26353389-26355191 138 3e-33
04_04_0876 - 29005543-29005630,29005841-29006596,29006939-29006955 36 0.047
05_06_0212 + 26410330-26410419,26410562-26410846,26411005-264112... 33 0.19
06_01_0926 - 7139220-7139318,7139394-7139478,7139573-7139643,713... 31 1.0
12_01_0400 + 3169597-3170504,3170510-3171269 29 3.1
02_04_0562 - 23886272-23886357,23886456-23886571,23887045-238871... 29 3.1
03_06_0510 + 34423528-34424046,34424132-34425025 29 4.0
11_01_0772 - 6455042-6458107 28 7.1
06_03_0854 + 25400855-25403741,25406174-25407708 28 7.1
04_04_1107 - 30954647-30954769,30955052-30955141,30955309-309556... 28 7.1
04_04_1098 + 30876785-30876835,30876846-30877171,30877396-308774... 28 7.1
>03_03_0094 + 14378953-14380728
Length = 591
Score = 139 bits (337), Expect = 2e-33
Identities = 59/108 (54%), Positives = 87/108 (80%)
Frame = -3
Query: 659 IKPLEGLLIAHKRILSKTALLMLFAXGAKVLLPGILRYEDGIEVDQEIVIVTTKGEAVAL 480
+ PLE LL ++KR++ K + + GAK+++PG+LR+E+ IEV +E+V++TTKGEA+A+
Sbjct: 304 VMPLEVLLTSYKRLVVKDSAVNAICYGAKLMIPGLLRFENEIEVGEEVVLMTTKGEAIAI 363
Query: 479 AVALMTTSTMASCDHGVAAKLKRVIMERDTYPRKWGLGPKASQKKILI 336
+A MTT+ MA+CDHG AK+KRV+M+RDTYPRKWGLGP A +KK ++
Sbjct: 364 GIAEMTTAVMATCDHGAVAKIKRVVMDRDTYPRKWGLGPVALKKKKMV 411
Score = 45.2 bits (102), Expect = 6e-05
Identities = 24/60 (40%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Frame = -2
Query: 762 SGIQGEKEGMVTMHDILDAQWSYETTKTRLIFVENQTSGRPPDCSQKD-IIKDSAVNAVC 586
SGI GE + MVTMHD++DA+W+ + S K ++KDSAVNA+C
Sbjct: 269 SGILGETDNMVTMHDVMDARWAMDNFNDESYLRRIVMPLEVLLTSYKRLVVKDSAVNAIC 328
Score = 43.6 bits (98), Expect = 2e-04
Identities = 26/72 (36%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Frame = -1
Query: 352 RKKSSYXQGKLDKYGKPNENTPKEWLNSYVNYNVKKEPENGDGVEEG--SRKRTASTANA 179
+KK +G LDK+GKPNE TP EWL + V P GD + G +
Sbjct: 406 KKKKMVAEGLLDKHGKPNEKTPSEWLRNAV------LPAGGDAMIAGIAAAPEPEKPKVK 459
Query: 178 EDPDVSIEVKQE 143
E+ DV+ E K++
Sbjct: 460 EEADVAEETKEK 471
>07_03_1408 - 26353389-26355191
Length = 600
Score = 138 bits (335), Expect = 3e-33
Identities = 58/108 (53%), Positives = 87/108 (80%)
Frame = -3
Query: 659 IKPLEGLLIAHKRILSKTALLMLFAXGAKVLLPGILRYEDGIEVDQEIVIVTTKGEAVAL 480
+ PLE LL ++KR++ K + + GAK+++PG+LR+E+ I+V +E+V++TTKGEA+A+
Sbjct: 300 VMPLEVLLTSYKRLVVKDSAVNAICYGAKLMIPGLLRFENDIDVGEEVVLMTTKGEAIAI 359
Query: 479 AVALMTTSTMASCDHGVAAKLKRVIMERDTYPRKWGLGPKASQKKILI 336
+A MTT+ MA+CDHG AK+KRV+M+RDTYPRKWGLGP A +KK ++
Sbjct: 360 GIAEMTTAVMATCDHGAVAKIKRVVMDRDTYPRKWGLGPVALKKKKMV 407
Score = 46.4 bits (105), Expect = 2e-05
Identities = 24/60 (40%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Frame = -2
Query: 762 SGIQGEKEGMVTMHDILDAQWSYETTKTRLIFVENQTSGRPPDCSQKD-IIKDSAVNAVC 586
SGI GE++ MVTMHD++DA+W+ + S K ++KDSAVNA+C
Sbjct: 265 SGILGEQDNMVTMHDVMDARWAMDNYNDETYLRRIVMPLEVLLTSYKRLVVKDSAVNAIC 324
Score = 42.3 bits (95), Expect = 4e-04
Identities = 30/103 (29%), Positives = 43/103 (41%), Gaps = 1/103 (0%)
Frame = -1
Query: 352 RKKSSYXQGKLDKYGKPNENTPKEWLNSYVNYNVKKEPENGDG-VEEGSRKRTASTANAE 176
+KK +G LDK+GKPNE TP EW+ NV P GD + + + AE
Sbjct: 402 KKKKMVAEGLLDKHGKPNEKTPAEWIR-----NVAL-PTGGDAMIASIAAAPEEAKVKAE 455
Query: 175 DPDVSIEVKQEXXXXXXKRDSEAPAEADATMDTSESPETAEQP 47
V+ E +E +D E A+ + +A P
Sbjct: 456 QDVVATEEVKEKKKKKKHKDEEDAADEGRKRKIEDDDASASVP 498
>04_04_0876 - 29005543-29005630,29005841-29006596,29006939-29006955
Length = 286
Score = 35.5 bits (78), Expect = 0.047
Identities = 13/23 (56%), Positives = 19/23 (82%)
Frame = -2
Query: 762 SGIQGEKEGMVTMHDILDAQWSY 694
SGI GE++ MVTMHD++DA+ +
Sbjct: 239 SGIHGEQDNMVTMHDVMDARQEF 261
>05_06_0212 +
26410330-26410419,26410562-26410846,26411005-26411208,
26411636-26411692,26411859-26412926
Length = 567
Score = 33.5 bits (73), Expect = 0.19
Identities = 33/122 (27%), Positives = 51/122 (41%), Gaps = 5/122 (4%)
Frame = -1
Query: 403 WNETRTPENG-VSDRKPHRKKSSY----XQGKLDKYGKPNENTPKEWLNSYVNYNVKKEP 239
W P+ V+D KPH +K+SY GKL + + + P E + + +K
Sbjct: 248 WRPISHPKRAAVTDAKPHTRKASYAMETESGKLKRNSRRSSAAPVESSQTNIAMETEKSR 307
Query: 238 ENGDGVEEGSRKRTASTANAEDPDVSIEVKQEXXXXXXKRDSEAPAEADATMDTSESPET 59
N RK T+STA++ E+++ +S A A +T T E PE
Sbjct: 308 RN-------PRKFTSSTADSVPESQLTELEKVKRNLRKVTNSMAEASKVSTPAT-EIPER 359
Query: 58 AE 53
E
Sbjct: 360 QE 361
>06_01_0926 - 7139220-7139318,7139394-7139478,7139573-7139643,
7139996-7140076,7140805-7140895,7141242-7141330,
7141749-7141802,7141906-7142085,7142175-7142237,
7142575-7142705,7142807-7142900,7143343-7143684,
7143957-7144348,7145010-7148487,7149101-7149187,
7149324-7149367,7149495-7149591,7150429-7150572
Length = 1873
Score = 31.1 bits (67), Expect = 1.0
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Frame = -1
Query: 247 KEPENGDGVEEGSRKRTASTANAEDPDVSIEVKQEXXXXXXKRDSEAPAEADATMDTS-E 71
K PE+ E+ S K A T EDP V++E + E + S P + +A ++ E
Sbjct: 1164 KLPEDSTTFEKPSEKDDAGTKQTEDP-VTLEKEPE-----EDKGSVEPTQDNAGLEKPLE 1217
Query: 70 SPETAEQPADDSV 32
E + +P++DSV
Sbjct: 1218 EDEASAKPSEDSV 1230
>12_01_0400 + 3169597-3170504,3170510-3171269
Length = 555
Score = 29.5 bits (63), Expect = 3.1
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +1
Query: 352 CEAFGPRPHFLGYVSRSIMTRLSFAATP 435
CEA P H Y +R + R+S AATP
Sbjct: 212 CEATSPVDHLAYYFARGLKLRISGAATP 239
>02_04_0562 -
23886272-23886357,23886456-23886571,23887045-23887127,
23887683-23887829,23887946-23887993,23888166-23888384,
23889370-23889541,23889636-23889700,23890386-23890512,
23891358-23891450,23891520-23891629,23891722-23891868,
23892161-23892473,23892580-23893178
Length = 774
Score = 29.5 bits (63), Expect = 3.1
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Frame = -1
Query: 202 RTASTANAEDPDVSIEVKQEXXXXXXKRDSEA-PAEADATMD--TSESPETAEQPADDSV 32
RTASTA A P + IE +Q KR EA P E D ++ +S + + +SV
Sbjct: 112 RTASTATAGQPKLDIEDEQSEDQKQNKRKKEASPEECDQAVEGLSSAKAKAKAKQVQESV 171
Query: 31 R 29
+
Sbjct: 172 K 172
>03_06_0510 + 34423528-34424046,34424132-34425025
Length = 470
Score = 29.1 bits (62), Expect = 4.0
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = -2
Query: 678 RLIFVENQTSGRPPDCSQKDIIKD-SAVNAVC 586
R + V + SGRPP S D++K A+NA C
Sbjct: 72 RFVAVPDGMSGRPPPVSVGDVVKHIRALNAAC 103
>11_01_0772 - 6455042-6458107
Length = 1021
Score = 28.3 bits (60), Expect = 7.1
Identities = 14/51 (27%), Positives = 25/51 (49%)
Frame = -2
Query: 747 EKEGMVTMHDILDAQWSYETTKTRLIFVENQTSGRPPDCSQKDIIKDSAVN 595
EK+G T+ ++ + + L V N GR CS DI+++ A++
Sbjct: 563 EKKGDSTLEEVAEGYLMELVHRNMLQLVYNDELGRVSTCSMHDILRELALS 613
>06_03_0854 + 25400855-25403741,25406174-25407708
Length = 1473
Score = 28.3 bits (60), Expect = 7.1
Identities = 18/53 (33%), Positives = 27/53 (50%)
Frame = +1
Query: 451 IVDVVIRATANATASPLVVTITISWSTSMPSSYLKIPGNSTLAPXANSINSAV 609
+ V+ A A S V + S T P++ + PG+STLAP A++ AV
Sbjct: 1237 LTSAVVTAGAPLPPSAAPVPVPASAPTMEPNATIS-PGSSTLAPGASAAAPAV 1288
>04_04_1107 -
30954647-30954769,30955052-30955141,30955309-30955617,
30955732-30955842,30955945-30956379,30956452-30956610,
30957044-30957994,30959016-30959483
Length = 881
Score = 28.3 bits (60), Expect = 7.1
Identities = 21/82 (25%), Positives = 41/82 (50%), Gaps = 3/82 (3%)
Frame = -1
Query: 400 NETRTPENGVSDRKPHRKKSSYXQGKLDKYGKPNENTPKEWLNSYVNYNVKKEPE---NG 230
+E + + G + P RK+SS G+ + K ++P E L + + K+PE N
Sbjct: 309 SELKKAQAGKTIGCPKRKRSSKNAGENKRKNKGFPSSPNEGLYLRRSKRLTKQPEQPIND 368
Query: 229 DGVEEGSRKRTASTANAEDPDV 164
D V++ + + + N++ PD+
Sbjct: 369 DPVQQPA--ASPNQYNSDPPDI 388
>04_04_1098 +
30876785-30876835,30876846-30877171,30877396-30877418,
30877687-30879392
Length = 701
Score = 28.3 bits (60), Expect = 7.1
Identities = 32/129 (24%), Positives = 53/129 (41%), Gaps = 10/129 (7%)
Frame = -1
Query: 391 RTPENGVSDRKPHRK---KSSYX-QGKLDK--YGKPNENTPKEWLNSYVNYNVKKEPENG 230
+ P N + D KP K K Y + + D Y K +N PK + +S KE E
Sbjct: 490 KIPYNDLKDDKPSSKVVRKDRYSDESETDSETYVKKKKNLPKSYHHSDKPAQRGKEKEEN 549
Query: 229 DGVEEGSRKR----TASTANAEDPDVSIEVKQEXXXXXXKRDSEAPAEADATMDTSESPE 62
G RKR + S ++A + ++ + KR + +E+ + D S S +
Sbjct: 550 SGKNVDKRKRHDTDSDSDSHARERKRHLDARAS-LAAQKKRSVTSSSESSESSDYSSSSD 608
Query: 61 TAEQPADDS 35
+ + DS
Sbjct: 609 SESDVSSDS 617
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,723,419
Number of Sequences: 37544
Number of extensions: 366896
Number of successful extensions: 1152
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1149
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -