Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_T7_H22
         (920 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    30   0.40 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   0.70 

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 30.3 bits (65), Expect = 0.40
 Identities = 30/129 (23%), Positives = 32/129 (24%)
 Frame = +2

Query: 533 PPXPXXPAXXXXXXXPXPPXXXXPPXPXXPXIAXXXLXXXTXXXLXXXXXSPXPXXXXXP 712
           PP P  P        P PP     P P  P  A                 +P       P
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIP 396

Query: 713 HPPAPXPXPXXXPXXXXXXPXXXXXPXXXXPXXPXXXXXPXXNXPXPXXXPLLPXPVPXX 892
              AP   P          P     P    P  P     P      P   P  P P+P  
Sbjct: 397 GRSAPALPPLGNASRTSTPP--VPTPPSLPPSAP-PSLPPSAPPSLPMGAPAAP-PLPPS 452

Query: 893 XPXXXPXPA 919
            P   P PA
Sbjct: 453 APIAPPLPA 461



 Score = 27.9 bits (59), Expect = 2.1
 Identities = 19/60 (31%), Positives = 19/60 (31%)
 Frame = +2

Query: 443 PXLAQXGLXXPXXPXL*XXQPPXPPX*XXAPPXPXXPAXXXXXXXPXPPXXXXPPXPXXP 622
           P  A   L     P L    P  PP    AP  P  PA       P PP    PP    P
Sbjct: 424 PPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPA-GMPAAPPLPPAAPAPPPAPAP 482



 Score = 26.6 bits (56), Expect = 4.9
 Identities = 18/80 (22%), Positives = 21/80 (26%)
 Frame = +3

Query: 675 PXLHPPXXXXXXPTPPPPXPXXXXXXXXXXXXPXSXXSPTXXXPXPPPXPXRPXXTXPXX 854
           P L P        TPP P P            P +  S     P  PP P       P  
Sbjct: 401 PALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLP 460

Query: 855 RXXXSSRXXXPXXXXXPXXP 914
               ++    P     P  P
Sbjct: 461 AGMPAAPPLPPAAPAPPPAP 480


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.5 bits (63), Expect = 0.70
 Identities = 12/37 (32%), Positives = 14/37 (37%)
 Frame = +3

Query: 714 TPPPPXPXXXXXXXXXXXXPXSXXSPTXXXPXPPPXP 824
           +PPPP P            P    +P    P PPP P
Sbjct: 731 SPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPP 767


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,508,831
Number of Sequences: 5004
Number of extensions: 18936
Number of successful extensions: 85
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 468512460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)