Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_T7_H22
         (920 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    25   1.3  
DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    22   6.8  
DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex det...    22   6.8  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    22   6.8  
AY569716-1|AAS86669.1|  406|Apis mellifera complementary sex det...    22   9.0  
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    22   9.0  

>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 24.6 bits (51), Expect = 1.3
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -2

Query: 313 SLISNLSNTCDLTPLPEWSCEQSAWWGACGRVL 215
           SL +N   +  LTP P W+  ++   GACG  +
Sbjct: 98  SLDTNRGGSPKLTPYPNWAQNKA---GACGSAI 127


>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 22.2 bits (45), Expect = 6.8
 Identities = 9/25 (36%), Positives = 10/25 (40%)
 Frame = +1

Query: 664 PSPXXXFTXPXXXXXPPPPRPRXPP 738
           P+P   F  P      PP  PR  P
Sbjct: 153 PTPFPRFIPPNAYRFRPPQNPRFGP 177


>DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 22.2 bits (45), Expect = 6.8
 Identities = 9/25 (36%), Positives = 10/25 (40%)
 Frame = +1

Query: 664 PSPXXXFTXPXXXXXPPPPRPRXPP 738
           P+P   F  P      PP  PR  P
Sbjct: 153 PTPFPRFIPPNAYRFRPPQNPRFGP 177


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 22.2 bits (45), Expect = 6.8
 Identities = 9/25 (36%), Positives = 10/25 (40%)
 Frame = +1

Query: 664 PSPXXXFTXPXXXXXPPPPRPRXPP 738
           P+P   F  P      PP  PR  P
Sbjct: 391 PTPFPRFIPPNAYRFRPPQNPRFGP 415


>AY569716-1|AAS86669.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 21.8 bits (44), Expect = 9.0
 Identities = 10/33 (30%), Positives = 12/33 (36%)
 Frame = +1

Query: 640 PXXLNXXXPSPXXXFTXPXXXXXPPPPRPRXPP 738
           P   +   P+P   F  P      PP  PR  P
Sbjct: 371 PRFRHIGPPTPFPRFIPPNAYRFRPPLNPRFGP 403


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.8 bits (44), Expect = 9.0
 Identities = 9/25 (36%), Positives = 10/25 (40%)
 Frame = +1

Query: 664 PSPXXXFTXPXXXXXPPPPRPRXPP 738
           P+P   F  P      PP  PR  P
Sbjct: 373 PTPFPRFIPPNVYRFRPPLNPRFEP 397


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,089
Number of Sequences: 438
Number of extensions: 3165
Number of successful extensions: 56
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29992872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)