Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP08_T7_H21
(790 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L24559-1|AAA16459.1| 598|Homo sapiens DNA polymerase alpha prot... 35 0.29
CR456737-1|CAG33018.1| 598|Homo sapiens POLA2 protein. 35 0.29
BC002990-1|AAH02990.1| 598|Homo sapiens polymerase (DNA directe... 35 0.29
BC001347-1|AAH01347.1| 598|Homo sapiens polymerase (DNA directe... 35 0.29
Y09703-1|CAA70874.1| 586|Homo sapiens MEMA protein. 31 3.6
Y13467-1|CAA73867.1| 1566|Homo sapiens RB18A protein protein. 31 4.7
BC131783-1|AAI31784.1| 1581|Homo sapiens mediator complex subuni... 31 4.7
AF283812-1|AAF98352.1| 1566|Homo sapiens vitamin D receptor-inte... 31 4.7
AF055994-1|AAC39854.1| 1581|Homo sapiens thyroid hormone recepto... 31 4.7
L37368-1|AAA92859.1| 305|Homo sapiens RNA-binding protein protein. 30 8.3
BC108316-1|AAI08317.1| 305|Homo sapiens RNA binding protein S1,... 30 8.3
BC001838-1|AAH01838.1| 305|Homo sapiens RNA binding protein S1,... 30 8.3
BC001659-1|AAH01659.1| 305|Homo sapiens RNA binding protein S1,... 30 8.3
AK074675-1|BAC11129.1| 252|Homo sapiens protein ( Homo sapiens ... 30 8.3
AF274003-1|AAL56665.1| 282|Homo sapiens splicing-related factor... 30 8.3
>L24559-1|AAA16459.1| 598|Homo sapiens DNA polymerase alpha
protein.
Length = 598
Score = 35.1 bits (77), Expect = 0.29
Identities = 16/34 (47%), Positives = 22/34 (64%)
Frame = -3
Query: 650 GNSLQNLYTPRHDVCKRSVRSRSPHQLEIPSGYS 549
G+ + + TP + KRSV +RSPHQL PS +S
Sbjct: 119 GSQKRAISTPETPLTKRSVSTRSPHQLLSPSSFS 152
>CR456737-1|CAG33018.1| 598|Homo sapiens POLA2 protein.
Length = 598
Score = 35.1 bits (77), Expect = 0.29
Identities = 16/34 (47%), Positives = 22/34 (64%)
Frame = -3
Query: 650 GNSLQNLYTPRHDVCKRSVRSRSPHQLEIPSGYS 549
G+ + + TP + KRSV +RSPHQL PS +S
Sbjct: 119 GSQKRAISTPETPLTKRSVSTRSPHQLLSPSSFS 152
>BC002990-1|AAH02990.1| 598|Homo sapiens polymerase (DNA directed),
alpha 2 (70kD subunit) protein.
Length = 598
Score = 35.1 bits (77), Expect = 0.29
Identities = 16/34 (47%), Positives = 22/34 (64%)
Frame = -3
Query: 650 GNSLQNLYTPRHDVCKRSVRSRSPHQLEIPSGYS 549
G+ + + TP + KRSV +RSPHQL PS +S
Sbjct: 119 GSQKRAISTPETPLTKRSVSTRSPHQLLSPSSFS 152
>BC001347-1|AAH01347.1| 598|Homo sapiens polymerase (DNA directed),
alpha 2 (70kD subunit) protein.
Length = 598
Score = 35.1 bits (77), Expect = 0.29
Identities = 16/34 (47%), Positives = 22/34 (64%)
Frame = -3
Query: 650 GNSLQNLYTPRHDVCKRSVRSRSPHQLEIPSGYS 549
G+ + + TP + KRSV +RSPHQL PS +S
Sbjct: 119 GSQKRAISTPETPLTKRSVSTRSPHQLLSPSSFS 152
>Y09703-1|CAA70874.1| 586|Homo sapiens MEMA protein.
Length = 586
Score = 31.5 bits (68), Expect = 3.6
Identities = 28/84 (33%), Positives = 38/84 (45%)
Frame = -3
Query: 395 RSRW*LHTRPSRPNGKPSTSPKARHYGSS*SINGAFRHHKHRSPSSSNPSLATKGSTSEL 216
RSR + S+ + S+S + +S S + S SSS+ S +T GS+S
Sbjct: 428 RSRGRARNKTSKSRSRSSSSSSSSSSSTSSSSGSSSSSGSSSSRSSSSSSSSTSGSSS-- 485
Query: 215 THRHSPLSFSPDLLSGSRFRSGGR 144
R S S S S SR RS GR
Sbjct: 486 --RDSSSSTSTSSSSESRSRSRGR 507
>Y13467-1|CAA73867.1| 1566|Homo sapiens RB18A protein protein.
Length = 1566
Score = 31.1 bits (67), Expect = 4.7
Identities = 18/45 (40%), Positives = 26/45 (57%)
Frame = -3
Query: 353 GKPSTSPKARHYGSS*SINGAFRHHKHRSPSSSNPSLATKGSTSE 219
GKPS+ + GS S +G+ HH H S SSS+ S + K +S+
Sbjct: 1060 GKPSSHSQYTSSGSV-SSSGSKSHHSHSSSSSSSASTSGKMKSSK 1103
>BC131783-1|AAI31784.1| 1581|Homo sapiens mediator complex subunit 1
protein.
Length = 1581
Score = 31.1 bits (67), Expect = 4.7
Identities = 18/45 (40%), Positives = 26/45 (57%)
Frame = -3
Query: 353 GKPSTSPKARHYGSS*SINGAFRHHKHRSPSSSNPSLATKGSTSE 219
GKPS+ + GS S +G+ HH H S SSS+ S + K +S+
Sbjct: 1075 GKPSSHSQYTSSGSV-SSSGSKSHHSHSSSSSSSASTSGKMKSSK 1118
>AF283812-1|AAF98352.1| 1566|Homo sapiens vitamin D
receptor-interacting protein complex component DRIP205
protein.
Length = 1566
Score = 31.1 bits (67), Expect = 4.7
Identities = 18/45 (40%), Positives = 26/45 (57%)
Frame = -3
Query: 353 GKPSTSPKARHYGSS*SINGAFRHHKHRSPSSSNPSLATKGSTSE 219
GKPS+ + GS S +G+ HH H S SSS+ S + K +S+
Sbjct: 1060 GKPSSHSQYTSSGSV-SSSGSKSHHSHSSSSSSSASTSGKMKSSK 1103
>AF055994-1|AAC39854.1| 1581|Homo sapiens thyroid hormone
receptor-associated protein complex component TRAP220
protein.
Length = 1581
Score = 31.1 bits (67), Expect = 4.7
Identities = 18/45 (40%), Positives = 26/45 (57%)
Frame = -3
Query: 353 GKPSTSPKARHYGSS*SINGAFRHHKHRSPSSSNPSLATKGSTSE 219
GKPS+ + GS S +G+ HH H S SSS+ S + K +S+
Sbjct: 1075 GKPSSHSQYTSSGSV-SSSGSKSHHSHSSSSSSSASTSGKMKSSK 1118
>L37368-1|AAA92859.1| 305|Homo sapiens RNA-binding protein protein.
Length = 305
Score = 30.3 bits (65), Expect = 8.3
Identities = 32/92 (34%), Positives = 42/92 (45%)
Frame = -3
Query: 419 GTT*EPSHRSRW*LHTRPSRPNGKPSTSPKARHYGSS*SINGAFRHHKHRSPSSSNPSLA 240
G T E S + R TR R S+S ++R SS S +G+ S SSS+ + +
Sbjct: 47 GATKESSEKDRGRDKTRKRRSASSGSSSTRSR--SSSTSSSGSSTSTGSSSGSSSSSASS 104
Query: 239 TKGSTSELTHRHSPLSFSPDLLSGSRFRSGGR 144
GS+S T R S S S S SR R R
Sbjct: 105 RSGSSS--TSRSSSSSSSSGSPSPSRRRHDNR 134
>BC108316-1|AAI08317.1| 305|Homo sapiens RNA binding protein S1,
serine-rich domain protein.
Length = 305
Score = 30.3 bits (65), Expect = 8.3
Identities = 32/92 (34%), Positives = 42/92 (45%)
Frame = -3
Query: 419 GTT*EPSHRSRW*LHTRPSRPNGKPSTSPKARHYGSS*SINGAFRHHKHRSPSSSNPSLA 240
G T E S + R TR R S+S ++R SS S +G+ S SSS+ + +
Sbjct: 47 GATKESSEKDRGRDKTRKRRSASSGSSSTRSR--SSSTSSSGSSTSTGSSSGSSSSSASS 104
Query: 239 TKGSTSELTHRHSPLSFSPDLLSGSRFRSGGR 144
GS+S T R S S S S SR R R
Sbjct: 105 RSGSSS--TSRSSSSSSSSGSPSPSRRRHDNR 134
>BC001838-1|AAH01838.1| 305|Homo sapiens RNA binding protein S1,
serine-rich domain protein.
Length = 305
Score = 30.3 bits (65), Expect = 8.3
Identities = 32/92 (34%), Positives = 42/92 (45%)
Frame = -3
Query: 419 GTT*EPSHRSRW*LHTRPSRPNGKPSTSPKARHYGSS*SINGAFRHHKHRSPSSSNPSLA 240
G T E S + R TR R S+S ++R SS S +G+ S SSS+ + +
Sbjct: 47 GATKESSEKDRGRDKTRKRRSASSGSSSTRSR--SSSTSSSGSSTSTGSSSGSSSSSASS 104
Query: 239 TKGSTSELTHRHSPLSFSPDLLSGSRFRSGGR 144
GS+S T R S S S S SR R R
Sbjct: 105 RSGSSS--TSRSSSSSSSSGSPSPSRRRHDNR 134
>BC001659-1|AAH01659.1| 305|Homo sapiens RNA binding protein S1,
serine-rich domain protein.
Length = 305
Score = 30.3 bits (65), Expect = 8.3
Identities = 32/92 (34%), Positives = 42/92 (45%)
Frame = -3
Query: 419 GTT*EPSHRSRW*LHTRPSRPNGKPSTSPKARHYGSS*SINGAFRHHKHRSPSSSNPSLA 240
G T E S + R TR R S+S ++R SS S +G+ S SSS+ + +
Sbjct: 47 GATKESSEKDRGRDKTRKRRSASSGSSSTRSR--SSSTSSSGSSTSTGSSSGSSSSSASS 104
Query: 239 TKGSTSELTHRHSPLSFSPDLLSGSRFRSGGR 144
GS+S T R S S S S SR R R
Sbjct: 105 RSGSSS--TSRSSSSSSSSGSPSPSRRRHDNR 134
>AK074675-1|BAC11129.1| 252|Homo sapiens protein ( Homo sapiens
cDNA FLJ90194 fis, clone MAMMA1001284. ).
Length = 252
Score = 30.3 bits (65), Expect = 8.3
Identities = 35/120 (29%), Positives = 51/120 (42%), Gaps = 3/120 (2%)
Frame = -3
Query: 374 TRPSRPNGKPSTSPKA-RHYGSS*SINGAFRHHKHRSPSSSNPSLATKGSTSEL-THRHS 201
++ S PN P+TSP R + S +G S S S P+ TK T L +++H
Sbjct: 131 SKESSPNSNPATSPGGIRFFSRSRKTSGL-------SSSPSTPTQVTKQHTFPLESYKHE 183
Query: 200 PLSFSPDL-LSGSRFRSGGRFCEAXXXXXXXXXXXXLSPASSPTNVRVKLK*PLKAISIG 24
P + S S +G RFC + P +SPT+ P KA+S+G
Sbjct: 184 PERLENRIYASSSPPDTGQRFCPS------SFQSPTRPPLASPTHYA-----PSKAVSLG 232
>AF274003-1|AAL56665.1| 282|Homo sapiens splicing-related factor
RNPS1 protein.
Length = 282
Score = 30.3 bits (65), Expect = 8.3
Identities = 32/92 (34%), Positives = 42/92 (45%)
Frame = -3
Query: 419 GTT*EPSHRSRW*LHTRPSRPNGKPSTSPKARHYGSS*SINGAFRHHKHRSPSSSNPSLA 240
G T E S + R TR R S+S ++R SS S +G+ S SSS+ + +
Sbjct: 24 GATKESSEKDRGRDKTRKRRSASSGSSSTRSR--SSSTSSSGSSTSTGSSSGSSSSSASS 81
Query: 239 TKGSTSELTHRHSPLSFSPDLLSGSRFRSGGR 144
GS+S T R S S S S SR R R
Sbjct: 82 RSGSSS--TSRSSSSSSSSGSPSPSRRRHDNR 111
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,462,204
Number of Sequences: 237096
Number of extensions: 2272480
Number of successful extensions: 8736
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 8477
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8720
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9646050614
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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