Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_T7_H17
         (811 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0405 - 17767303-17767665,17767815-17768039,17768115-177683...   204   9e-53
02_04_0096 + 19669428-19669525,19670770-19670818,19671041-196711...    31   1.4  
02_01_0487 + 3503003-3503037,3505802-3505833,3506012-3506127,350...    30   1.9  
04_03_1018 + 21753634-21753640,21754282-21754315,21754413-217544...    28   7.6  

>07_03_0405 -
           17767303-17767665,17767815-17768039,17768115-17768342,
           17768607-17768621,17768622-17768810,17769106-17769213,
           17769917-17770045
          Length = 418

 Score =  204 bits (497), Expect = 9e-53
 Identities = 112/224 (50%), Positives = 135/224 (60%)
 Frame = -2

Query: 810 IXSXXXERXGXHSDILWXXXXVIXDTGNVIGKHRKNHIXESRRF*RIXLLXWKVTPAILY 631
           I S   ER   H +I+W    VI + GN+IG HRKNHI     F          T   ++
Sbjct: 189 IVSPILERDVNHGEIVWNTAVVIGNHGNIIGIHRKNHIPRVGDFNESTYYMEGNTGHPVF 248

Query: 630 SRPDTARSR*TSASDGXHVLNWMMFGQNGAEIVFNPSATIAGEGGSEYMWNVEARNAAIT 451
                 +          H LNW+ FG NGAEIVFNPSAT+ GE  SE MW +EARNAAI 
Sbjct: 249 ETA-YGKIGVNICYGRHHPLNWLAFGLNGAEIVFNPSATV-GEL-SEPMWPIEARNAAIA 305

Query: 450 NCYFTAAINRVGYEEFPNEFTSADGKPAHKDLGLFYGSSYFCGPDGVRCPGLSRTRDGLL 271
           N YF  +INRVG E FPN FTS DGKP H D G FYGSS+F  PD    P LSR RDGL+
Sbjct: 306 NSYFVGSINRVGTEVFPNPFTSGDGKPQHADFGHFYGSSHFSAPDASCTPSLSRYRDGLM 365

Query: 270 IAAVDLNLNRQIRDRRCYYMTQRLDMYVNSLSKVLELDYKPQVV 139
           I+ +DLNL RQI+D+  + MT R D Y + LS+ L+ D+KPQV+
Sbjct: 366 ISDMDLNLCRQIKDKWGFRMTARYDTYASLLSEYLKPDFKPQVI 409



 Score = 51.2 bits (117), Expect = 9e-07
 Identities = 21/30 (70%), Positives = 23/30 (76%)
 Frame = -1

Query: 673 DPTTXMEGNXGHPVFATRYGKIAVNICFGR 584
           + T  MEGN GHPVF T YGKI VNIC+GR
Sbjct: 234 ESTYYMEGNTGHPVFETAYGKIGVNICYGR 263


>02_04_0096 +
           19669428-19669525,19670770-19670818,19671041-19671132,
           19671235-19671386,19671478-19671524,19671617-19671650,
           19671769-19671935,19672070-19672166,19672239-19672408
          Length = 301

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 34/125 (27%), Positives = 52/125 (41%), Gaps = 6/125 (4%)
 Frame = -2

Query: 546 GAEIVFNPSATIAGEG-----GSEYMWNVEARNAAITNCYFTAAINRVGYEEFPNEFTSA 382
           GAEI+F P+A I  E       S   W    +  A  N     A NR+G E    E    
Sbjct: 176 GAEILFYPTA-IGSEPQDNNLDSREHWKRVMQGHAGANLVPLVASNRIGRETVETE---- 230

Query: 381 DGKPAHKDLGL-FYGSSYFCGPDGVRCPGLSRTRDGLLIAAVDLNLNRQIRDRRCYYMTQ 205
                H +  + F+G+S+  GP G      +   + +L+A  DL+  +  R     +  +
Sbjct: 231 -----HGESTITFFGNSFIAGPTGEIVKLANDKDEDVLVAEFDLDEIKSTRHGWGIFRDR 285

Query: 204 RLDMY 190
           R D+Y
Sbjct: 286 RPDLY 290


>02_01_0487 +
           3503003-3503037,3505802-3505833,3506012-3506127,
           3506227-3506437,3506555-3506792,3507075-3507252,
           3507962-3508079,3508167-3508373,3509134-3509234
          Length = 411

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 21/64 (32%), Positives = 32/64 (50%)
 Frame = -2

Query: 531 FNPSATIAGEGGSEYMWNVEARNAAITNCYFTAAINRVGYEEFPNEFTSADGKPAHKDLG 352
           F+PS  I GEGG   ++  + RN  +      +  +R G +EF NE   A    +H++L 
Sbjct: 45  FSPSNKI-GEGGFGSVYKGKLRNGKLVAVKVLSLESRQGAKEFLNEL-MAISNVSHENLV 102

Query: 351 LFYG 340
             YG
Sbjct: 103 KLYG 106


>04_03_1018 +
           21753634-21753640,21754282-21754315,21754413-21754432,
           21754485-21755782
          Length = 452

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 17/59 (28%), Positives = 27/59 (45%)
 Frame = +1

Query: 274 QAVSGAGQTGAPNAVGAAEVARSVEQAQVFVCRFPVSRSELVRELLVADSVDGRCEVAV 450
           +  SG      P+A+ A E   + E  ++ V R P     LVR + + +S +   E AV
Sbjct: 342 KCASGGCAGAVPSALAAVEALAASEAGRMAVARAPGGTRALVRHVFMMNSSNDGSEHAV 400


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,834,750
Number of Sequences: 37544
Number of extensions: 400360
Number of successful extensions: 1125
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1096
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1124
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2209429392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)