Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP08_T7_H15
(786 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_03_0088 + 12327339-12328092,12329474-12329601,12330249-123304... 32 0.45
11_06_0610 - 25449085-25453284 31 1.0
01_01_0668 - 5109476-5110112,5110196-5110439,5110519-5110917,511... 30 1.8
03_05_0955 + 29168771-29170507 30 2.4
12_01_0589 + 4801332-4801573,4801696-4801815,4802540-4802927,480... 29 3.2
12_01_0302 - 2286171-2286341,2286747-2286968 29 4.2
09_04_0737 - 19822822-19822973,19823069-19823135,19823666-198238... 29 5.5
09_04_0220 - 15813809-15815380 29 5.5
02_05_1213 - 34963971-34964658,34965030-34965270,34965347-349657... 29 5.5
02_05_0640 - 30558523-30559027,30559123-30559252,30559388-305598... 29 5.5
04_04_1527 - 34167673-34168245 28 7.3
06_02_0240 + 13397512-13397856 28 9.7
05_05_0155 + 22787658-22787930,22788029-22788096,22789600-227899... 28 9.7
02_02_0718 - 13290764-13290897,13292375-13293041,13293364-132937... 28 9.7
>01_03_0088 +
12327339-12328092,12329474-12329601,12330249-12330474,
12332638-12332765,12332880-12333033,12333408-12333841
Length = 607
Score = 32.3 bits (70), Expect = 0.45
Identities = 22/55 (40%), Positives = 24/55 (43%)
Frame = -1
Query: 510 VSPPYFQVNDESQASRLISRHSTHTPLPPSNSPPHRRRCHGHKPSHHRL*SQNRR 346
+SPP Q S+A R S PLP P HRR PS RL S RR
Sbjct: 1 MSPPPPQRPSPSRAGRANLFSSPPPPLPNCYDPKHRRPAPPPLPSARRLPSNRRR 55
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 31.1 bits (67), Expect = 1.0
Identities = 23/93 (24%), Positives = 33/93 (35%), Gaps = 4/93 (4%)
Frame = -1
Query: 666 PIPYTNHPRLNIHFHQSPDAVLEGVRAGXKPPLSSEAPSAYLTPSSLGMXKGVSPPYFQV 487
P P +H + +P G AG PP S TP S P +
Sbjct: 557 PTPTASHSPPPVPEGHTPSPPKSGPPAGESPPTPESKASPPPTPEEYTPSPPKSTPPAEK 616
Query: 486 NDESQASRLIS----RHSTHTPLPPSNSPPHRR 400
+ + S+ S HTP PP ++PP +
Sbjct: 617 SPPTPESKASSPPPPAPEGHTPSPPESTPPSEK 649
>01_01_0668 -
5109476-5110112,5110196-5110439,5110519-5110917,
5111390-5111668,5111886-5112257,5112371-5112475,
5112832-5112909,5112990-5113199,5113287-5113406,
5113508-5113606,5113685-5113750,5113914-5114141,
5114216-5114521,5115324-5115381
Length = 1066
Score = 30.3 bits (65), Expect = 1.8
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 6/64 (9%)
Frame = -1
Query: 576 PPLSSEAPSAYLTPSSLGMXKG-----VSPPYFQVNDESQASRLISRHSTHTPLPPSN-S 415
PP P+ + PS+ G+ + V+PP QA S HS +PP+N S
Sbjct: 205 PPPQRSLPA--IPPSTSGVPRESVKPPVAPPIIAQAPRQQALAPSSDHSNGNSVPPANTS 262
Query: 414 PPHR 403
PPH+
Sbjct: 263 PPHK 266
>03_05_0955 + 29168771-29170507
Length = 578
Score = 29.9 bits (64), Expect = 2.4
Identities = 17/60 (28%), Positives = 23/60 (38%)
Frame = -1
Query: 549 AYLTPSSLGMXKGVSPPYFQVNDESQASRLISRHSTHTPLPPSNSPPHRRRCHGHKPSHH 370
AY+ S G ++ Q + Q + H H P PP PP H H+ HH
Sbjct: 2 AYMCADS-GNLMAIAQQVIQQQQQQQQQQQRHHHHHHLPPPP---PPQSMAPHHHQQKHH 57
>12_01_0589 +
4801332-4801573,4801696-4801815,4802540-4802927,
4803528-4803865,4804514-4804598
Length = 390
Score = 29.5 bits (63), Expect = 3.2
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -1
Query: 528 LGMXKGVSPPYFQVNDESQASRLISRHSTHTPLPPSNSPP 409
+G+ P N ASR S HS +TP PP+++PP
Sbjct: 116 IGVGVSCGPAILNGNALDNASRRSSSHS-NTPSPPADAPP 154
>12_01_0302 - 2286171-2286341,2286747-2286968
Length = 130
Score = 29.1 bits (62), Expect = 4.2
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +2
Query: 89 RLQRSRKKHGEDLPTGGRSRRKGEKLE*MQREEQ 190
RL+R RK + D+ G + +GEKLE + +E+
Sbjct: 57 RLERLRKGYARDVRAAGAMKVRGEKLENWREKEK 90
>09_04_0737 -
19822822-19822973,19823069-19823135,19823666-19823822,
19824003-19824177,19824364-19824481,19824676-19824874,
19824983-19825062,19825141-19825257,19825791-19825961,
19826121-19826597
Length = 570
Score = 28.7 bits (61), Expect = 5.5
Identities = 18/49 (36%), Positives = 25/49 (51%)
Frame = +3
Query: 81 FYVDSKGVGRNMARIYQLAVDLGGRERSLNRCREKSSFVVLKNRPDVVV 227
F+VD G G + ++++LAV+ G R CR VV DVVV
Sbjct: 93 FHVDPTGDGSSFLQLHRLAVE-GTRRLLAACCRSGVRTVVYTGSADVVV 140
>09_04_0220 - 15813809-15815380
Length = 523
Score = 28.7 bits (61), Expect = 5.5
Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 4/61 (6%)
Frame = -2
Query: 323 ELALKVSSIIGTRVYAFDPSCYFSTPPFDTV----LYDNIRTVLKDNKTALLSASIQASL 156
EL V+ ++G AF P CYF + + +YD ++ L + A + S
Sbjct: 29 ELRAAVARLLGRATRAFSPYCYFDVTETEGMGTNEIYDAVQLYLSSSAAPAAGARLTLSR 88
Query: 155 P 153
P
Sbjct: 89 P 89
>02_05_1213 -
34963971-34964658,34965030-34965270,34965347-34965736,
34966515-34966781,34966881-34967249,34967931-34968014,
34968113-34968226,34969952-34970018
Length = 739
Score = 28.7 bits (61), Expect = 5.5
Identities = 20/65 (30%), Positives = 29/65 (44%)
Frame = -1
Query: 570 LSSEAPSAYLTPSSLGMXKGVSPPYFQVNDESQASRLISRHSTHTPLPPSNSPPHRRRCH 391
L S AP +P + + +SP + + R +S ST P+ P + HRR H
Sbjct: 26 LPSPAPHPSGSPDTRILGPRISPAF--------SPRAMSPESTGGPVHPPSHKHHRRPYH 77
Query: 390 GHKPS 376
H PS
Sbjct: 78 PHSPS 82
>02_05_0640 - 30558523-30559027,30559123-30559252,30559388-30559868,
30560292-30560346,30560537-30560613,30561228-30561315,
30561490-30561593,30562050-30562231,30562347-30563109,
30563195-30563438,30564513-30564658,30565158-30565283,
30565404-30565517,30565595-30565762,30566283-30566528,
30566605-30566767,30566970-30567064,30567274-30567357,
30567769-30568055,30568359-30568572,30568923-30569140,
30569386-30569623,30570312-30571118,30571202-30571301,
30571694-30571737,30571824-30571973
Length = 1942
Score = 28.7 bits (61), Expect = 5.5
Identities = 20/65 (30%), Positives = 30/65 (46%)
Frame = -2
Query: 248 PPFDTVLYDNIRTVLKDNKTALLSASIQASLPSSEIYRQLVDPRHVSSDSFGVYVKS*SL 69
P F T+LY ++KD S+ L S+ Y L+DP S D+ + +
Sbjct: 1349 PEFHTLLYAEAARIIKDCWWLADSSRPVKELDSAVGYA-LLDPTWASQDNTSTAIGNIVA 1407
Query: 68 ILHSF 54
+LHSF
Sbjct: 1408 LLHSF 1412
>04_04_1527 - 34167673-34168245
Length = 190
Score = 28.3 bits (60), Expect = 7.3
Identities = 18/58 (31%), Positives = 26/58 (44%)
Frame = -1
Query: 675 IKSPIPYTNHPRLNIHFHQSPDAVLEGVRAGXKPPLSSEAPSAYLTPSSLGMXKGVSP 502
++ P+ TN P ++ SP L G A PP++ A SA T S +G P
Sbjct: 61 LRGPLARTNFPLVSSLPLPSPHYHLPGKAAAAAPPVAGPACSASSTVESSSGPRGPRP 118
>06_02_0240 + 13397512-13397856
Length = 114
Score = 27.9 bits (59), Expect = 9.7
Identities = 19/58 (32%), Positives = 22/58 (37%)
Frame = -1
Query: 540 TPSSLGMXKGVSPPYFQVNDESQASRLISRHSTHTPLPPSNSPPHRRRCHGHKPSHHR 367
TPS LGM V E A+R + P PP H RR G +P R
Sbjct: 53 TPSLLGMLTQVKCLVVVETQEMYAARRQAEEDRRAPRPPL-IVSHTRRRRGERPPQRR 109
>05_05_0155 +
22787658-22787930,22788029-22788096,22789600-22789915,
22790207-22790323
Length = 257
Score = 27.9 bits (59), Expect = 9.7
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = -1
Query: 444 THTPLPPSNSPPHRRRCHGHKPSHH 370
+H PP PPH R H H P HH
Sbjct: 21 SHIFAPP---PPHLRHPHHHPPHHH 42
>02_02_0718 -
13290764-13290897,13292375-13293041,13293364-13293719,
13294559-13294629,13295326-13295336
Length = 412
Score = 27.9 bits (59), Expect = 9.7
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = -2
Query: 449 IPRILRSPPPTHPLIEDVVMATNQAIIDYK 360
+P++L+SPP T+ IED + + ID K
Sbjct: 382 LPQLLQSPPETYHAIEDGHNPSKTSFIDMK 411
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,206,049
Number of Sequences: 37544
Number of extensions: 486766
Number of successful extensions: 1609
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1497
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1600
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2115411120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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