Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP08_T7_H13
(776 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 33 0.046
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 29 0.74
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 27 3.0
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 26 5.2
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 25 9.2
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 25 9.2
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 25 9.2
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 33.1 bits (72), Expect = 0.046
Identities = 23/103 (22%), Positives = 26/103 (25%)
Frame = +1
Query: 466 PXXXPSXXXXXXPPPXPXXXPXXXPPXPXXPXSXXSPXXXXXPXPXXPXXPXXPXXXSPP 645
P PS P P P P P S P P P P +PP
Sbjct: 1141 PVPKPSVAAPPVPAPS-GAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPP 1199
Query: 646 XXSPXXXXPXXXPXXXXPXXXRPPXXXPXXXLPAIXPXXLXXP 774
P P P P P P +P + P
Sbjct: 1200 VPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAP 1242
Score = 30.3 bits (65), Expect = 0.32
Identities = 21/99 (21%), Positives = 25/99 (25%)
Frame = +1
Query: 460 SXPXXXPSXXXXXXPPPXPXXXPXXXPPXPXXPXSXXSPXXXXXPXPXXPXXPXXPXXXS 639
S P P+ P P P P P S P P P +
Sbjct: 1061 SAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGA 1120
Query: 640 PPXXSPXXXXPXXXPXXXXPXXXRPPXXXPXXXLPAIXP 756
PP P P P +P P P+ P
Sbjct: 1121 PPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAP 1159
Score = 30.3 bits (65), Expect = 0.32
Identities = 27/123 (21%), Positives = 29/123 (23%), Gaps = 1/123 (0%)
Frame = +1
Query: 382 PXXPPPXXXXXSXXXPXXXXXXXXXXSXPXXXPSXXXXXXPPPXPXXX-PXXXPPXPXXP 558
P P P S P P P P P P P P P
Sbjct: 1064 PPVPAPSSEIPSIPAPSGAPPVPAPSGIPPV-PKPSVAAPPVPKPSVAVPPVPAPSGAPP 1122
Query: 559 XSXXSPXXXXXPXPXXPXXPXXPXXXSPPXXSPXXXXPXXXPXXXXPXXXRPPXXXPXXX 738
S P P P +PP +P P P P P P
Sbjct: 1123 VPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVP 1182
Query: 739 LPA 747
PA
Sbjct: 1183 KPA 1185
Score = 27.5 bits (58), Expect = 2.3
Identities = 23/94 (24%), Positives = 24/94 (25%), Gaps = 4/94 (4%)
Frame = +3
Query: 504 PPXPXXXXXXXXPXPXPPXLXXVPXXX----PXXXPXXPXXPPXPRXAXSPXGXPXXXLX 671
PP P P P P VP P P P P A P P +
Sbjct: 1121 PPVPKPSVAAP-PVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIP 1179
Query: 672 XXPXXXPXXXXRXPPPXXPXXXXPXXXPPXSXPP 773
P PP P P P PP
Sbjct: 1180 PVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPP 1213
Score = 26.6 bits (56), Expect = 4.0
Identities = 20/91 (21%), Positives = 22/91 (24%), Gaps = 1/91 (1%)
Frame = +3
Query: 504 PPXPXXXXXXXXPXPXP-PXLXXVPXXXPXXXPXXPXXPPXPRXAXSPXGXPXXXLXXXP 680
PP P P P P + P P P +P G P
Sbjct: 1032 PPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGI 1091
Query: 681 XXXPXXXXRXPPPXXPXXXXPXXXPPXSXPP 773
P PP P P P PP
Sbjct: 1092 PPVPKPSVAAPPVPKPSVAVPPVPAPSGAPP 1122
Score = 25.8 bits (54), Expect = 6.9
Identities = 18/84 (21%), Positives = 23/84 (27%)
Frame = +1
Query: 505 PPXPXXXPXXXPPXPXXPXSXXSPXXXXXPXPXXPXXPXXPXXXSPPXXSPXXXXPXXXP 684
P P P P P +P P P P +PP P P
Sbjct: 1060 PSAPPPVPAPSSEIPSIPAPSGAPPV---PAPSGIPPVPKPSVAAPPVPKPSVAVPPVPA 1116
Query: 685 XXXXPXXXRPPXXXPXXXLPAIXP 756
P +P P +P+ P
Sbjct: 1117 PSGAPPVPKPSVAAPPVPVPSGAP 1140
Score = 25.8 bits (54), Expect = 6.9
Identities = 20/93 (21%), Positives = 25/93 (26%), Gaps = 3/93 (3%)
Frame = +1
Query: 505 PPXPXXXPXXXP-PXPXXPXSXXSPXXXXXPXPXXPXXPXXPXXX--SPPXXSPXXXXPX 675
PP P P P P P P P P P +PP +P P
Sbjct: 1121 PPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPP 1180
Query: 676 XXPXXXXPXXXRPPXXXPXXXLPAIXPXXLXXP 774
PP P P++ + P
Sbjct: 1181 VPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPP 1213
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 29.1 bits (62), Expect = 0.74
Identities = 14/47 (29%), Positives = 14/47 (29%)
Frame = +1
Query: 502 PPPXPXXXPXXXPPXPXXPXSXXSPXXXXXPXPXXPXXPXXPXXXSP 642
PPP P P P P S P P P P P P
Sbjct: 150 PPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPP 196
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 27.1 bits (57), Expect = 3.0
Identities = 12/36 (33%), Positives = 12/36 (33%)
Frame = +1
Query: 502 PPPXPXXXPXXXPPXPXXPXSXXSPXXXXXPXPXXP 609
PPP P PP P P S P P P
Sbjct: 1709 PPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVP 1744
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 26.2 bits (55), Expect = 5.2
Identities = 26/122 (21%), Positives = 29/122 (23%)
Frame = +1
Query: 391 PPPXXXXXSXXXPXXXXXXXXXXSXPXXXPSXXXXXXPPPXPXXXPXXXPPXPXXPXSXX 570
PPP + P P P P P PP P P S
Sbjct: 313 PPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPP--PRSAP 370
Query: 571 SPXXXXXPXPXXPXXPXXPXXXSPPXXSPXXXXPXXXPXXXXPXXXRPPXXXPXXXLPAI 750
S P P +PP P P P PP P P+
Sbjct: 371 STGRQPPPLSSSRAVSNPP---APPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSA 427
Query: 751 XP 756
P
Sbjct: 428 PP 429
Score = 26.2 bits (55), Expect = 5.2
Identities = 27/129 (20%), Positives = 31/129 (24%)
Frame = +1
Query: 358 PPXXXXXXPXXPPPXXXXXSXXXPXXXXXXXXXXSXPXXXPSXXXXXXPPPXPXXXPXXX 537
PP PPP + P S P P P P P
Sbjct: 365 PPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTP-PVPTPPSL 423
Query: 538 PPXPXXPXSXXSPXXXXXPXPXXPXXPXXPXXXSPPXXSPXXXXPXXXPXXXXPXXXRPP 717
PP +P P P P +PP + P P P PP
Sbjct: 424 PPSAPPSLPPSAPPSLPMGAPAAPPLP-PSAPIAPPLPAGMPAAPPLPPAAPAP----PP 478
Query: 718 XXXPXXXLP 744
P P
Sbjct: 479 APAPAPAAP 487
Score = 25.8 bits (54), Expect = 6.9
Identities = 18/70 (25%), Positives = 18/70 (25%)
Frame = +3
Query: 504 PPXPXXXXXXXXPXPXPPXLXXVPXXXPXXXPXXPXXPPXPRXAXSPXGXPXXXLXXXPX 683
PP P PP L P P P PP P A P P P
Sbjct: 420 PPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLP--AGMPAAPPLPPAAPAPP 477
Query: 684 XXPXXXXRXP 713
P P
Sbjct: 478 PAPAPAPAAP 487
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 25.4 bits (53), Expect = 9.2
Identities = 9/19 (47%), Positives = 9/19 (47%)
Frame = +1
Query: 502 PPPXPXXXPXXXPPXPXXP 558
PPP P P PP P P
Sbjct: 12 PPPPPGFEPPSQPPPPPPP 30
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 25.4 bits (53), Expect = 9.2
Identities = 18/61 (29%), Positives = 18/61 (29%), Gaps = 1/61 (1%)
Frame = +2
Query: 539 PRSPXXXXXXRPXXXXXXPPXXPPXXPXPPXXXLP-PGXPXXXXXXXXXXXPXXPXXXAP 715
P P P PP PP PP P PG P P P AP
Sbjct: 504 PLPPIPGAPGMPNLNMSQPPMVPPGMALPPGMPAPFPGYP------AVPAMPGIPGATAP 557
Query: 716 P 718
P
Sbjct: 558 P 558
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 25.4 bits (53), Expect = 9.2
Identities = 15/53 (28%), Positives = 15/53 (28%)
Frame = +3
Query: 615 PPXPRXAXSPXGXPXXXLXXXPXXXPXXXXRXPPPXXPXXXXPXXXPPXSXPP 773
PP P P P P P PPP P PP PP
Sbjct: 733 PPPPPAVIVPTPAPAPI--PVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,220,453
Number of Sequences: 5004
Number of extensions: 14263
Number of successful extensions: 95
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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