Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP08_T7_H08
(771 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609... 153 1e-37
03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431... 153 1e-37
12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902 29 3.1
11_01_0121 - 948450-948904,949073-949224,949389-949449,950201-95... 29 5.4
06_03_0543 + 21967787-21970261 29 5.4
12_02_1050 + 25689933-25690954,25691021-25691215,25691357-25691423 28 7.2
12_01_0798 + 7314885-7314953,7315324-7315387,7315489-7315677,731... 28 7.2
12_01_0132 - 990833-991287,991470-991593,991987-991991,992628-99... 28 7.2
07_01_0317 + 2229894-2230137,2231142-2231233,2231327-2231364,223... 28 9.5
>07_03_1272 -
25360180-25360286,25360454-25360658,25360748-25360945,
25361034-25361296,25361865-25362009
Length = 305
Score = 153 bits (371), Expect = 1e-37
Identities = 67/111 (60%), Positives = 83/111 (74%)
Frame = -2
Query: 689 YAYCGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRF 510
+A GR TPG FTNQ+Q +F EPRLLI+ DP DHQPI E++ NIP IA C+TDSP+R+
Sbjct: 101 HAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRY 160
Query: 509 VDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYRXP 357
VDI IP N K SIG ++WLLAR VL++RG + +WDV+VDLFFYR P
Sbjct: 161 VDIGIPANNKGKQSIGCLFWLLARMVLQMRGTILPGHKWDVMVDLFFYRDP 211
Score = 46.8 bits (106), Expect = 2e-05
Identities = 21/31 (67%), Positives = 25/31 (80%)
Frame = -3
Query: 769 NPADVFVISSRPFGQRAVLKFAAHTGATXIA 677
NP D+ V S+RP+GQRAVLKFA +TGA IA
Sbjct: 74 NPQDIIVQSARPYGQRAVLKFAQYTGAHAIA 104
>03_01_0582 -
4318837-4318967,4319219-4319399,4319504-4319701,
4319791-4320053,4320453-4320597
Length = 305
Score = 153 bits (371), Expect = 1e-37
Identities = 67/111 (60%), Positives = 84/111 (75%)
Frame = -2
Query: 689 YAYCGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRF 510
+A GR TPG FTNQ+Q +F EPRLLI+ DP DHQPI E++ NIP IA C+TDSP+R+
Sbjct: 101 HAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRY 160
Query: 509 VDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYRXP 357
VDI IP N K +SIG ++WLLAR VL++RG + +WDV+VDLFFYR P
Sbjct: 161 VDIGIPANNKGRNSIGCLFWLLARMVLQMRGTILPGHKWDVMVDLFFYRDP 211
Score = 46.8 bits (106), Expect = 2e-05
Identities = 21/31 (67%), Positives = 25/31 (80%)
Frame = -3
Query: 769 NPADVFVISSRPFGQRAVLKFAAHTGATXIA 677
NP D+ V S+RP+GQRAVLKFA +TGA IA
Sbjct: 74 NPQDIIVQSARPYGQRAVLKFAQYTGAHAIA 104
>12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902
Length = 781
Score = 29.5 bits (63), Expect = 3.1
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = -2
Query: 209 TRCSSCFWSTPCSRRMVCPGTR*VEHN 129
T C C P + VCPG+R V+ N
Sbjct: 275 TECKKCLAGAPAGIKQVCPGSRTVKAN 301
Score = 27.9 bits (59), Expect = 9.5
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = -2
Query: 209 TRCSSCFWSTPCSRRMVCPGTR 144
TRC C P R CPG+R
Sbjct: 81 TRCKECLARAPAGVRQECPGSR 102
>11_01_0121 -
948450-948904,949073-949224,949389-949449,950201-950336,
951042-951376,952523-952577
Length = 397
Score = 28.7 bits (61), Expect = 5.4
Identities = 18/46 (39%), Positives = 19/46 (41%)
Frame = -1
Query: 765 PLMCSSSHHGPSVSVLY*SLPRTPVLRXLRTFHTRCFY*PDPSCIP 628
PL S G SVL LP V R L T C P+P C P
Sbjct: 344 PLQGSGGSDGAVQSVLGSGLPSYRVNRRLMTNRVHCRALPNPKCSP 389
>06_03_0543 + 21967787-21970261
Length = 824
Score = 28.7 bits (61), Expect = 5.4
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = -2
Query: 461 LMWWLLAREVLRLRGVLPRDQRWDVVVDLF 372
L W++L RE +LRGV P + ++++ + F
Sbjct: 472 LGWFILRREAKQLRGVWPAEAGYEMIANHF 501
>12_02_1050 + 25689933-25690954,25691021-25691215,25691357-25691423
Length = 427
Score = 28.3 bits (60), Expect = 7.2
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = -2
Query: 209 TRCSSCFWSTPCSRRMVCPGTR*VEHN 129
T+C C P VCPG+R V N
Sbjct: 93 TQCKECLAGAPAGITQVCPGSRTVNAN 119
>12_01_0798 +
7314885-7314953,7315324-7315387,7315489-7315677,
7316430-7316625,7316727-7316953,7317177-7318134,
7320104-7321307,7321517-7321876,7321965-7323195,
7323334-7323599,7323738-7326335
Length = 2453
Score = 28.3 bits (60), Expect = 7.2
Identities = 25/91 (27%), Positives = 36/91 (39%)
Frame = +1
Query: 475 EDLVLHGIAMSTNLSGESVLHKAITGMLTYEASVMG*WSCAGSNTIKRRGSRNAAWIWLV 654
ED L+ I + S E + ITG V+ S G + +K R +RN+A W
Sbjct: 4 EDEALYEIRRLASGSHEILREGEITGTSGAAGGVLSYLSLQGVSKLKERWTRNSALGWSK 63
Query: 655 KAPGVKRPQXA*HRCARQTSVQHADRRAVMR 747
K + R A V +R V+R
Sbjct: 64 KRSRINAALLFVSRNADYVGVAVGNRITVLR 94
>12_01_0132 -
990833-991287,991470-991593,991987-991991,992628-992763,
993417-993751,994912-994966
Length = 369
Score = 28.3 bits (60), Expect = 7.2
Identities = 18/46 (39%), Positives = 19/46 (41%)
Frame = -1
Query: 765 PLMCSSSHHGPSVSVLY*SLPRTPVLRXLRTFHTRCFY*PDPSCIP 628
PL S G SVL LP V R L T C P+P C P
Sbjct: 316 PLQGSGGSDGAVQSVLGSGLPSYRVNRRLTTNSVHCRAIPNPKCSP 361
>07_01_0317 +
2229894-2230137,2231142-2231233,2231327-2231364,
2231695-2231717,2232026-2232132,2232208-2232370,
2232581-2232663,2232775-2232837,2233049-2233072,
2233119-2233304
Length = 340
Score = 27.9 bits (59), Expect = 9.5
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -3
Query: 385 WLICSSTVXPEESEKDEQQARE 320
WLIC V P K+ +QARE
Sbjct: 284 WLICQGNVVPIPGAKNAEQARE 305
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,457,793
Number of Sequences: 37544
Number of extensions: 424626
Number of successful extensions: 1134
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1094
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1133
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2075009728
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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