Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP08_T7_G24
(831 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23G3.10c |ssr3||SWI/SNF and RSC complex subunit Ssr3|Schizos... 104 2e-23
SPAC18G6.15 |mal3||EB1 family Mal3|Schizosaccharomyces pombe|chr... 30 0.35
SPAC25H1.06 |||histone acetyltransferase complex subunit |Schizo... 29 1.1
SPCC285.17 |spp27|uaf30|RNA polymerase I upstream activation fac... 27 3.3
SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac... 27 4.3
SPCC1795.01c |mad3|SPCC895.02|mitotic spindle checkpoint protein... 27 4.3
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual 26 5.7
SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase protein... 26 7.5
SPAC222.11 |hem13||coproporphyrinogen III oxidase |Schizosacchar... 25 10.0
>SPAC23G3.10c |ssr3||SWI/SNF and RSC complex subunit
Ssr3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 425
Score = 104 bits (249), Expect = 2e-23
Identities = 51/159 (32%), Positives = 85/159 (53%)
Frame = -1
Query: 597 EREYIACDRYLEQIFGAPRVKLAEVPARLGALLHAPDPIVINHVIAVEPPHDAKQTACYD 418
E+ I CD+ L +F A R+ +P + L DPIVI + I V H ++ +D
Sbjct: 244 EKRLINCDKALRDLFEADRLYFPRIPELMNRFLEPIDPIVIPYTINVSE-HTVEKVTIFD 302
Query: 417 IDVEVDDTLKAQMNNFLLSTANQQEIQGLDSKIHETVDTINQLKTNREFFLSFSKDPQQF 238
I + +D +Q+ +FL + +Q +I+ +D K+ E + I ++ +F FS+ P +F
Sbjct: 303 IRINTEDPRHSQIRSFLATMMSQDKIRSIDDKLTELIQAITYSQSKYDFMKKFSESPIEF 362
Query: 237 IQKWLVSQSRDLKSMSGGASGNPEEERRAQFYCAGWAGE 121
I +W+ SQSRDL+ + G + N E+R A +Y W E
Sbjct: 363 INEWIESQSRDLEIVLDGTNMNYAEKRSADYYQQPWVHE 401
Score = 40.7 bits (91), Expect = 2e-04
Identities = 20/66 (30%), Positives = 31/66 (46%)
Frame = -2
Query: 815 PVXTXXTXGXXVKRPGXXNXRXTILXXXXYXPLQFKXTSGWRGXXGVHTQTRPVIVNALW 636
P + + G V R G + I+ P ++K + + G+ TRP IV+ LW
Sbjct: 172 PDNSNTSNGITVTRKGDQSVDVKIMLYPEEHPERYKLSKAFANILGIREGTRPDIVSYLW 231
Query: 635 QYVKTH 618
QY+K H
Sbjct: 232 QYIKFH 237
>SPAC18G6.15 |mal3||EB1 family Mal3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 308
Score = 30.3 bits (65), Expect = 0.35
Identities = 12/53 (22%), Positives = 32/53 (60%)
Frame = -1
Query: 351 QQEIQGLDSKIHETVDTINQLKTNREFFLSFSKDPQQFIQKWLVSQSRDLKSM 193
QQ+I L+++++E +T+ L+ R+F+ + ++ + +Q L + +++M
Sbjct: 178 QQQITSLETQLYEVNETMFGLERERDFYFNKLREIEILVQTHLTTSPMSMENM 230
>SPAC25H1.06 |||histone acetyltransferase complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 408
Score = 28.7 bits (61), Expect = 1.1
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = +2
Query: 266 KKNSRFVFNWLMVSTVSWILESRPWISCWLAVLSR 370
KKNS+ ++N L+ T++W S W+S ++ +
Sbjct: 28 KKNSKHLYNLLITRTLTWPSLSIQWLSAMESITEK 62
>SPCC285.17 |spp27|uaf30|RNA polymerase I upstream activation factor
complex subunit Spp27|Schizosaccharomyces pombe|chr
3|||Manual
Length = 233
Score = 27.1 bits (57), Expect = 3.3
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = -2
Query: 680 GVHTQTRPVIVNALWQYVKTH 618
G+ +RP V LW+Y+K H
Sbjct: 132 GLEQLSRPQTVKKLWEYIKAH 152
>SPBP4H10.06c |cut14|smc2, smc2|condensin subunit
Cut14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1172
Score = 26.6 bits (56), Expect = 4.3
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -1
Query: 366 LSTANQQEIQGLDSKIHETVDTINQLKTNRE 274
LST E G K+HE DT+N K +E
Sbjct: 388 LSTTEGHET-GYSRKLHEARDTLNDFKAEKE 417
>SPCC1795.01c |mad3|SPCC895.02|mitotic spindle checkpoint protein
Mad3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 310
Score = 26.6 bits (56), Expect = 4.3
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = -1
Query: 357 ANQQEIQGLDSKIHETVDTINQLKTNREFFLSFSKDPQQFIQKWL 223
AN E +GL K E ++K FL F + QQF +WL
Sbjct: 157 ANYFESRGLFQKADEVYQKGKRMKAKP--FLRFQQKYQQFTHRWL 199
>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1828
Score = 26.2 bits (55), Expect = 5.7
Identities = 14/60 (23%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Frame = -1
Query: 417 IDVEVDDTLKAQMNNFLLSTANQQEIQGLDSKIH----ETVDTINQLKTNREFFLSFSKD 250
+ +++ D L A NN++ + LD +H E++ +N+ +R LS +D
Sbjct: 1571 LSMDLQDALNAYFNNYVSEENRSHTVLVLDKSVHQFPWESLPCLNRQSVSRVPSLSILRD 1630
>SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 758
Score = 25.8 bits (54), Expect = 7.5
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = -1
Query: 363 STANQQEIQGLDSKIHETVDTINQLKTNREFFLSFSK 253
STA+++ I L + HE++ ++ K N+ F FS+
Sbjct: 113 STADEKLISQLGEEAHESLLKVHIEKANKHLFSLFSR 149
>SPAC222.11 |hem13||coproporphyrinogen III oxidase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 312
Score = 25.4 bits (53), Expect = 10.0
Identities = 9/33 (27%), Positives = 21/33 (63%)
Frame = +1
Query: 205 VSGLTDEPLLDELLRILAEAQEELAVCFQLVDG 303
+S +T EP+ ++ +++ + Q+E+ + VDG
Sbjct: 1 MSDITVEPIGKQMEKLILDVQQEIVAGLEAVDG 33
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,868,418
Number of Sequences: 5004
Number of extensions: 28911
Number of successful extensions: 149
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 408446760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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