Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP08_T7_G24
(831 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0689 + 18746735-18748296,18748401-18748485 109 3e-24
11_03_0216 + 11821726-11821860,11823217-11823286,11823704-118238... 33 0.28
01_01_0295 + 2421347-2421682 32 0.49
04_04_0680 - 27217563-27220088 30 2.0
03_01_0340 - 2680860-2682197 29 3.4
06_01_0757 + 5659081-5659605,5659694-5659919,5659994-5660333,566... 29 6.0
03_01_0392 + 3051469-3051876,3052414-3052832,3053992-3054061,305... 29 6.0
03_06_0067 + 31430669-31430852,31430954-31431099,31431227-314316... 28 7.9
>04_03_0689 + 18746735-18748296,18748401-18748485
Length = 548
Score = 109 bits (262), Expect = 3e-24
Identities = 54/153 (35%), Positives = 89/153 (58%)
Frame = -1
Query: 588 YIACDRYLEQIFGAPRVKLAEVPARLGALLHAPDPIVINHVIAVEPPHDAKQTACYDIDV 409
+ CD L+++FG +++ A + ++ L P PI + H I + + A +ACYD+ V
Sbjct: 370 FFMCDPQLKKVFGEDKLRFAMLSQKISQHLSPPPPINLEHKIKLSG-NGAHASACYDVIV 428
Query: 408 EVDDTLKAQMNNFLLSTANQQEIQGLDSKIHETVDTINQLKTNREFFLSFSKDPQQFIQK 229
+V L+ +M+ FL +T ++I+ D I ++ I++ + R FFL FS+ P +FI
Sbjct: 429 DVPFPLQKEMSAFLANTEKHKDIEACDEVISASIKKIHEHRRRRAFFLGFSQSPVEFINA 488
Query: 228 WLVSQSRDLKSMSGGASGNPEEERRAQFYCAGW 130
+ SQS+DLK ++G A+ N E ERRA FY W
Sbjct: 489 LIASQSKDLKLIAGEANRNIERERRADFYNQPW 521
Score = 39.5 bits (88), Expect = 0.003
Identities = 20/56 (35%), Positives = 25/56 (44%)
Frame = -2
Query: 791 GXXVKRPGXXNXRXTILXXXXYXPLQFKXTSGWRGXXGVHTQTRPVIVNALWQYVK 624
G VKR G I Y P +FK + GV TR ++ ALWQY+K
Sbjct: 303 GFEVKRKGDKEFSANIRLEMNYNPEKFKLSQPLMEVLGVEVDTRSRVIAALWQYIK 358
>11_03_0216 +
11821726-11821860,11823217-11823286,11823704-11823861,
11824304-11824479,11824564-11824612,11825293-11825430
Length = 241
Score = 33.1 bits (72), Expect = 0.28
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = -1
Query: 291 LKTNREFFLSFSKDPQQFIQKWLVSQSR-DLKSMSGGASGNPEEERRAQFYCAGWAG 124
+ T R F + S Q +++ L R D+ +SGG+SG+ + E C+G AG
Sbjct: 146 INTTRPFMRNVSAVDQSWVKPILKKLERLDMNKLSGGSSGSKDPEPLEDKQCSGGAG 202
>01_01_0295 + 2421347-2421682
Length = 111
Score = 32.3 bits (70), Expect = 0.49
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = -1
Query: 531 AEVPARLGALLHAPDPIVINHVIAVEPPHDAKQTACYDI 415
+++ A LG A ++IN V A +PP ++ACYD+
Sbjct: 18 SKIAAALGLFGVATASLIINLVAAFDPPQGFAESACYDL 56
>04_04_0680 - 27217563-27220088
Length = 841
Score = 30.3 bits (65), Expect = 2.0
Identities = 23/114 (20%), Positives = 49/114 (42%), Gaps = 3/114 (2%)
Frame = -1
Query: 633 VREDAPACRTXHEREYIACD--RYLEQIFGAPRVKLAEVPARLGAL-LHAPDPIVINHVI 463
+R D A R ER CD +Y+ + G + + L + LH P + ++H+
Sbjct: 369 IRPDLQAYRIFRERFITDCDEKKYIGNVPGIKVGDIFHLRVELCVVGLHRPHRVGVDHIK 428
Query: 462 AVEPPHDAKQTACYDIDVEVDDTLKAQMNNFLLSTANQQEIQGLDSKIHETVDT 301
+ A Y ++ + L + + ++ Q+I+G + + +++DT
Sbjct: 429 QEDGTCIAVSIVSYAQSSDIKNNLDVLVYSGAMTAIANQKIEGTNLALKKSMDT 482
>03_01_0340 - 2680860-2682197
Length = 445
Score = 29.5 bits (63), Expect = 3.4
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -3
Query: 367 AQHRQPAGDPRPRLQDPRDCGHHQPVENKP 278
++ ++P PRPR DP G + VE KP
Sbjct: 155 SRRKEPPRPPRPRPVDPDGAGDNAQVERKP 184
>06_01_0757 +
5659081-5659605,5659694-5659919,5659994-5660333,
5660677-5661025,5661121-5661723
Length = 680
Score = 28.7 bits (61), Expect = 6.0
Identities = 12/62 (19%), Positives = 33/62 (53%)
Frame = -1
Query: 381 MNNFLLSTANQQEIQGLDSKIHETVDTINQLKTNREFFLSFSKDPQQFIQKWLVSQSRDL 202
++N++L + + + + + + + ++ +RE ++S+S D QF+ +W + +D
Sbjct: 345 LHNWILENGSDEFVNDEKTCMGKRTEGTSEEGGSREKYISWSDDATQFMLEWYIELCKDK 404
Query: 201 KS 196
S
Sbjct: 405 PS 406
>03_01_0392 + 3051469-3051876,3052414-3052832,3053992-3054061,
3054923-3055016,3056587-3056907,3057298-3057403,
3058807-3058887,3059336-3059402,3059715-3060239,
3060328-3060553,3060628-3060967,3061311-3061659,
3061755-3062357
Length = 1202
Score = 28.7 bits (61), Expect = 6.0
Identities = 12/62 (19%), Positives = 33/62 (53%)
Frame = -1
Query: 381 MNNFLLSTANQQEIQGLDSKIHETVDTINQLKTNREFFLSFSKDPQQFIQKWLVSQSRDL 202
++N++L + + + + + + + ++ +RE ++S+S D QF+ +W + +D
Sbjct: 867 LHNWILENGSDEFVNDEKTCMGKRTEGTSEEGGSREKYISWSDDATQFMLEWYIELRKDK 926
Query: 201 KS 196
S
Sbjct: 927 PS 928
>03_06_0067 +
31430669-31430852,31430954-31431099,31431227-31431614,
31431707-31431783,31431922-31432146
Length = 339
Score = 28.3 bits (60), Expect = 7.9
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Frame = +2
Query: 455 STAMTWLMTMGSGACSRAPRRAGTSASLTR---GAPKICSRXRSQAMYSR 595
STA W+ + GS A S RR+G+++ +R GA + SR + Y R
Sbjct: 94 STAQLWVDSRGSDADSENDRRSGSTSPASRLLGGAEESSSRAVAPPPYFR 143
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,538,133
Number of Sequences: 37544
Number of extensions: 257549
Number of successful extensions: 1057
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1019
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1056
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2291695380
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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