Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_T7_G23
         (899 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0904 + 20717005-20718087                                         33   0.23 
03_01_0515 - 3864796-3865425                                           31   0.94 
09_02_0543 + 10427321-10428315,10428440-10429154                       31   1.6  

>04_03_0904 + 20717005-20718087
          Length = 360

 Score = 33.5 bits (73), Expect = 0.23
 Identities = 26/120 (21%), Positives = 36/120 (30%), Gaps = 3/120 (2%)
 Frame = +2

Query: 377 PRXXPTQPAASGRDTPXXGXSXFLSXQPAPXPXMAPXXTYPPQVAP*PSXXGXA---XTY 547
           P   PT P  + + TP        +  P P P      TY PQ  P P+         TY
Sbjct: 87  PTPKPTPPPYTPKPTPPAHTPTPPTYTPTPTPPKPTPPTYKPQPKPTPAPYTPTPTPPTY 146

Query: 548 PXRXRTGRLPXFXPRPXXPXXXWGXAKIXFXXFAXPXPXXXXXXPXXXXXXXPPPPRXAP 727
             + +    P + P+P      +            P P      P        P P+  P
Sbjct: 147 KPQPKPTPPPTYKPQPKPTPTPYTPTPTPPSYKPQPKPTPTPYTPTPTPPSYKPQPKPTP 206



 Score = 28.7 bits (61), Expect = 6.7
 Identities = 21/79 (26%), Positives = 25/79 (31%)
 Frame = +2

Query: 368 PXLPRXXPTQPAASGRDTPXXGXSXFLSXQPAPXPXMAPXXTYPPQVAP*PSXXGXAXTY 547
           P  P   PT P  +   TP          QP P P        PP   P P       TY
Sbjct: 100 PTPPAHTPTPPTYTPTPTPPKPTPPTYKPQPKPTPAPYTPTPTPPTYKPQPKPT-PPPTY 158

Query: 548 PXRXRTGRLPXFXPRPXXP 604
             + +    P + P P  P
Sbjct: 159 KPQPKPTPTP-YTPTPTPP 176


>03_01_0515 - 3864796-3865425
          Length = 209

 Score = 31.5 bits (68), Expect = 0.94
 Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 1/62 (1%)
 Frame = +1

Query: 547 PXPGXYRASSRLXPPXXPAXXXLGXXKNLXXSLRXPXSGXL-XSSPPXXNXXXTPPPPXX 723
           P P     +S   PP   +   L    ++  S   P +G L    PP  +   +PPPP  
Sbjct: 29  PAPSPEAEASPPSPPTEASPPPLAPPPSVTSSPPPPAAGPLMPPPPPPPSVTSSPPPPPL 88

Query: 724 PP 729
           PP
Sbjct: 89  PP 90


>09_02_0543 + 10427321-10428315,10428440-10429154
          Length = 569

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 21/79 (26%), Positives = 25/79 (31%)
 Frame = +2

Query: 368 PXLPRXXPTQPAASGRDTPXXGXSXFLSXQPAPXPXMAPXXTYPPQVAP*PSXXGXAXTY 547
           P +P   P  P A     P    +   S  P P P M P     P  AP P     +   
Sbjct: 28  PAIPESGPPPPPAPDMPPPPPTPAPQSSPAPPPAPDMTPPPGPGPAAAPSPHSPSPSNA- 86

Query: 548 PXRXRTGRLPXFXPRPXXP 604
           P       +P   P P  P
Sbjct: 87  PWVAPAADIPPPPPPPPNP 105


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,587,071
Number of Sequences: 37544
Number of extensions: 270717
Number of successful extensions: 1481
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 903
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1364
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2542098580
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)