Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_T7_G21
         (784 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    27   3.0  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   3.0  
SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces p...    27   3.0  
SPAC977.14c |||aldo/keto reductase, unknown biological role|Schi...    26   7.0  
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    25   9.3  
SPAC3C7.10 |pex13||peroxin-13|Schizosaccharomyces pombe|chr 1|||...    25   9.3  
SPAC824.09c |||GTPase activating protein |Schizosaccharomyces po...    25   9.3  
SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    25   9.3  

>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
           Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 14/52 (26%), Positives = 24/52 (46%)
 Frame = +3

Query: 36  IFMDRQIIPQSFMSKQTVK*SKFKVILTTYLLFDRNSPLRILPSRARIDPSF 191
           +F+    +  SF+  ++ K S    + +  L +D      +LP R  ID SF
Sbjct: 22  LFLQSHALMYSFLWSESAKKSLLNEVFSALLGYDHTLWNTLLPERPTIDASF 73


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 15/61 (24%), Positives = 27/61 (44%)
 Frame = +2

Query: 377  ALTRNLYLCPGCRPSTARLVTGPSVSPAVTQRPVASSMRSTTYLSMGCPPSSGGGLHDNV 556
            ++TR +   P   P+  + +  PSVS     +P+ S+  +    +    PS+   L D  
Sbjct: 1171 SVTRVVKELPVPAPAAPQTLNPPSVSTVQQSKPIESNTHTPEVKATSESPSASSNLEDRA 1230

Query: 557  A 559
            A
Sbjct: 1231 A 1231



 Score = 25.4 bits (53), Expect = 9.3
 Identities = 16/44 (36%), Positives = 20/44 (45%)
 Frame = +2

Query: 416  PSTARLVTGPSVSPAVTQRPVASSMRSTTYLSMGCPPSSGGGLH 547
            P     V  PS+ P+V Q+P  SS+   T  S   PPS     H
Sbjct: 1486 PPAVPNVPVPSMIPSVAQQP-PSSVAPATAPSSTLPPSQSSFAH 1528


>SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 417

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 26/92 (28%), Positives = 37/92 (40%)
 Frame = +2

Query: 299 PATSNGFLASVECGVVRGSERPCLLTALTRNLYLCPGCRPSTARLVTGPSVSPAVTQRPV 478
           PA S+   ASV    V  S     +T ++ +  +      + +  V   S S   +   V
Sbjct: 83  PAASSSVAASVT--PVASSSVAASVTPVSSSAVVDSATSAAASSSVIPTSSSVVASSSEV 140

Query: 479 ASSMRSTTYLSMGCPPSSGGGLHDNVAPFACT 574
           ASS  S+   S     SS GG  D V  + CT
Sbjct: 141 ASSTTSSAAASATSTGSSSGGFQDGV--YDCT 170


>SPAC977.14c |||aldo/keto reductase, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 351

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +1

Query: 133 LIVTHLCAFFPVGRESILLFNDVSSDG 213
           +++   C FFPV ++ I +F D+SS G
Sbjct: 90  IVILSKC-FFPVRKDLIKIFGDLSSRG 115


>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
            Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
 Frame = -1

Query: 361  PFRPPYDSALHGSQESVRRGWQTWHTEDQGLRQRLCGT-GMDQTAN 227
            P +  YDS L        +  Q WH   +  + RL    G ++T+N
Sbjct: 1455 PSKKFYDSRLEDGDNMAEKTQQVWHVNPKFTQYRLFDVRGKERTSN 1500


>SPAC3C7.10 |pex13||peroxin-13|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 288

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +2

Query: 461 VTQRPVASSMRSTTYLSMGCPPSSG 535
           VTQ P+A+ + +  Y +MG  P SG
Sbjct: 34  VTQHPLANRIVNPNYYNMGFNPYSG 58


>SPAC824.09c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 320

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +3

Query: 249 VPQSLCRSP*SSVCQVCQPRRTDSWLPWS 335
           V +SL R P + VC  C+      W  W+
Sbjct: 15  VLKSLLREPYNKVCADCKRNEQPRWASWN 43


>SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 486

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +2

Query: 356 ERPCLLTALTRNLYLCPGC 412
           ERP +L    R+ ++CPGC
Sbjct: 4   ERPGVLFNKIRSYFICPGC 22


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,548,758
Number of Sequences: 5004
Number of extensions: 53760
Number of successful extensions: 174
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)