Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_T7_G19
         (760 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0232 + 21130122-21130454,21130895-21131053,21131424-211315...    33   0.33 
06_03_1055 - 27234824-27234838,27236087-27236125,27236322-272373...    31   1.3  
07_03_0846 - 21983581-21986055                                         29   3.0  
05_04_0396 - 20934444-20934969,20935042-20935316,20935447-20935581     29   3.0  
01_06_0695 - 31292622-31293317                                         28   7.0  
08_02_0104 + 12404890-12405129,12405244-12405333,12405953-124060...    28   9.3  
05_02_0165 - 7256178-7256444                                           28   9.3  
03_05_0951 + 29093962-29094373,29095291-29095388,29095689-290960...    28   9.3  

>02_04_0232 +
           21130122-21130454,21130895-21131053,21131424-21131582,
           21132420-21132512,21133321-21133437,21133623-21133697,
           21133878-21134104,21134200-21135073
          Length = 678

 Score = 32.7 bits (71), Expect = 0.33
 Identities = 17/43 (39%), Positives = 20/43 (46%)
 Frame = +2

Query: 74  PSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSID 202
           PS TP  ER  S+D   PR     Y   R+RD    K+  S D
Sbjct: 365 PSDTPHLERSQSSDRRRPRSSDPRYTPSRTRDEDAHKQHSSRD 407


>06_03_1055 -
           27234824-27234838,27236087-27236125,27236322-27237388,
           27237422-27237630,27237650-27238053
          Length = 577

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 16/45 (35%), Positives = 27/45 (60%)
 Frame = -2

Query: 342 ASLAESGKDMLTVEPRESGGSKQCDFTSRVSHSKRETRRRSPFGS 208
           A+ A +GK +   E  E   S+QCD T  + +S RE ++R+P+ +
Sbjct: 430 AAAAAAGKPISEHEAIEHLWSRQCDLTEILQNSSRE-KKRNPYAA 473


>07_03_0846 - 21983581-21986055
          Length = 824

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 19/50 (38%), Positives = 26/50 (52%)
 Frame = +2

Query: 200 DLRDPNGLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSARLASA 349
           DL+D  G  +R    +C+T    S     PD   S VS+ LPD+A+ A A
Sbjct: 326 DLQDFTGGCKRNVPLQCQTN--SSSAQTQPDKFYSMVSVRLPDNAQSAVA 373


>05_04_0396 - 20934444-20934969,20935042-20935316,20935447-20935581
          Length = 311

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -2

Query: 429 GHLVHALGR-AAGGAKLPSAGLCLNASKAEASLA 331
           G LV  L R   GG    SAG+C   S+ +ASLA
Sbjct: 203 GRLVETLARDGGGGGGAYSAGVCFYGSRMDASLA 236


>01_06_0695 - 31292622-31293317
          Length = 231

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 16/45 (35%), Positives = 18/45 (40%)
 Frame = +2

Query: 26  PGAGLSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLR 160
           P     L   Q D   PS++      SST  S P HR  L P  R
Sbjct: 3   PSTKQLLPMPQQDPNSPSSSTSSSSSSSTSPSHPHHRAPLPPSPR 47


>08_02_0104 +
           12404890-12405129,12405244-12405333,12405953-12406036,
           12406888-12407132,12409032-12409095,12409270-12409968,
           12410063-12410176,12410287-12410418,12410594-12410770,
           12411085-12411138,12411230-12411292,12411396-12412307,
           12412408-12412535,12413680-12413962
          Length = 1094

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 19/61 (31%), Positives = 26/61 (42%)
 Frame = +2

Query: 20  ESPGAGLSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSI 199
           +SPG  L   R  HD +L         KSST  +  R   E      SR     +KT+S+
Sbjct: 734 DSPGDSL---RDVHDISLNLKLSLDSEKSSTKENSVRRNLEDAVQKLSRGVSANRKTESV 790

Query: 200 D 202
           +
Sbjct: 791 E 791


>05_02_0165 - 7256178-7256444
          Length = 88

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 17/56 (30%), Positives = 25/56 (44%)
 Frame = -2

Query: 459 LLSNERNRSFGHLVHALGRAAGGAKLPSAGLCLNASKAEASLAESGKDMLTVEPRE 292
           L S  R+ S G    A+G+       P+ GLC     +E  + E+GK   T   R+
Sbjct: 19  LASQPRHWSAGLAARAVGQRCSDLCQPARGLCTCIKPSEQRVREAGKHPGTARYRK 74


>03_05_0951 +
           29093962-29094373,29095291-29095388,29095689-29096087,
           29096999-29097724,29097802-29097968,29098046-29098311,
           29098396-29098581,29099072-29099346,29099435-29099683
          Length = 925

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
 Frame = -2

Query: 351 KAEASLAESGKDMLTVEP-RESGGSKQCDFTSRVSHSKRETR-RRSPFGSRRSMLSVFFL 178
           K+ AS A  G D     P R  GG K+    S  + SKR  + R + F     +L    L
Sbjct: 4   KSSASAAHQGGDAPAEAPRRRGGGGKRKSGGSSFTPSKRHAKERNAAFHVPPHLLHSGPL 63

Query: 177 TRASR 163
           TRA+R
Sbjct: 64  TRAAR 68


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,701,137
Number of Sequences: 37544
Number of extensions: 473230
Number of successful extensions: 1383
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1335
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1383
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)