Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP08_T7_G18
(830 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0578 + 4295386-4296489,4297394-4297507 137 9e-33
03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272... 132 3e-31
03_02_0027 + 5100865-5100878,5102241-5102708,5102795-5103021,510... 31 1.1
11_01_0205 + 1617044-1617197,1617845-1618233 30 2.6
02_05_1166 - 34633770-34634301,34634559-34635181,34635279-34637216 30 2.6
09_02_0570 + 10786779-10787144,10787353-10787547,10787647-107878... 29 3.4
02_04_0073 - 19471254-19472681 29 4.5
01_01_0612 + 4565422-4565481,4565597-4565671,4565760-4566332,456... 29 6.0
>07_01_0578 + 4295386-4296489,4297394-4297507
Length = 405
Score = 137 bits (332), Expect = 9e-33
Identities = 74/170 (43%), Positives = 102/170 (60%), Gaps = 2/170 (1%)
Frame = -3
Query: 765 KGXMRXRXXFQRXGPS*X-SXXXQGLXXAFXNIPRVEXXXXXXXXXXXLAPGGHLGRFVI 589
KG MR R R GP + AF N+P V+ LAPGGHLGRFVI
Sbjct: 197 KGKMRNRRYINRKGPLIVYGTEGSKIVKAFRNLPGVDVANVERLNLLDLAPGGHLGRFVI 256
Query: 588 WTQSAFGRLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIR 409
WT+SAF +L+ ++G+++ PS +KK F LP+PKMAN DL R++ SDE++ V++ NK V R
Sbjct: 257 WTESAFKKLEEVYGTFEAPSLKKKGFILPRPKMANADLGRIINSDEVQSVVKPLNKEVKR 316
Query: 408 ATRKLNPLTNNKAMLKLNPYAAVLKRKAIL-ELRRRKNLKALADAEKSGL 262
++ NPL N A+LKLNPY ++ A L E R K K D++++ L
Sbjct: 317 REKRKNPLKNVAAVLKLNPYFGTARKMATLAEAARIKARKEKLDSKRTKL 366
>03_06_0298 -
32925441-32925998,32926371-32926730,32927161-32927230,
32927642-32927797,32929181-32929242,32929339-32929352,
32930421-32930520,32931474-32932574
Length = 806
Score = 132 bits (319), Expect = 3e-31
Identities = 75/183 (40%), Positives = 102/183 (55%), Gaps = 2/183 (1%)
Frame = -3
Query: 765 KGXMRXRXXFQRXGPS*X-SXXXQGLXXAFXNIPRVEXXXXXXXXXXXLAPGGHLGRFVI 589
KG MR R R GP + AF N+P V+ LAPGGHLGRFVI
Sbjct: 196 KGKMRNRRYINRKGPLIVYGTEGSKVVKAFRNLPGVDVANVERLNLLDLAPGGHLGRFVI 255
Query: 588 WTQSAFGRLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIR 409
WT+ AF +LD ++G + TP+ +KK F LP+PKMAN DL+RL+ SDE++ V++ NK V
Sbjct: 256 WTECAFKKLDEVYGGFDTPALKKKGFVLPRPKMANADLSRLINSDEVQSVVKPINKEVKL 315
Query: 408 ATRKLNPLTNNKAMLKLNPYAAVLKRKAIL-ELRRRKNLKALADAEKSGLKLSKRNPAMK 232
+ NPL N A+LKLNPY ++ A L E R K D++++ L + +
Sbjct: 316 REARRNPLKNVAAVLKLNPYFGTARKMAALAEAARVKARTEKLDSKRTKLSPEESSKIKA 375
Query: 231 AEK 223
A K
Sbjct: 376 AGK 378
>03_02_0027 +
5100865-5100878,5102241-5102708,5102795-5103021,
5103670-5104577
Length = 538
Score = 31.1 bits (67), Expect = 1.1
Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
Frame = -1
Query: 635 TS*SWLREVILDVSSSGLSPHSAGLTPYSGHGRHHRNKRRTSTCPSQ--RWPTLTSHVFS 462
+S S+LR + LD+SSS +P S+ H HH+ + S WP S
Sbjct: 376 SSSSFLRCLGLDMSSSSSAPPSSSGQQQQHHHHHHQETMQVPLPASSLPEWPPRLQPEPS 435
Query: 461 SLMRSGRSSVLPTNA 417
++ SG LP +A
Sbjct: 436 PMLSSGLGLGLPYDA 450
>11_01_0205 + 1617044-1617197,1617845-1618233
Length = 180
Score = 29.9 bits (64), Expect = 2.6
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +1
Query: 355 IEFQHRLVIGERVQFACSTDHAFVGSTEDL 444
++ HRLV G+ +F +H FV S ++L
Sbjct: 35 LQISHRLVAGQNYEFQSGINHGFVNSRKNL 64
>02_05_1166 - 34633770-34634301,34634559-34635181,34635279-34637216
Length = 1030
Score = 29.9 bits (64), Expect = 2.6
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Frame = -3
Query: 621 APG--GHLGRFVIWTQSAFGRLDPLFGSWKTPSKQKKNFNLPQPKMANT 481
APG G GR+V+ SA LDP F SW S++ K F++ + A++
Sbjct: 670 APGVDGCSGRYVV-AASAGNALDPGFCSWDYYSREAKAFHIEEISHASS 717
>09_02_0570 +
10786779-10787144,10787353-10787547,10787647-10787826,
10787925-10788119,10789629-10789727,10789822-10790328,
10790438-10790779
Length = 627
Score = 29.5 bits (63), Expect = 3.4
Identities = 29/116 (25%), Positives = 51/116 (43%), Gaps = 4/116 (3%)
Frame = -3
Query: 540 KTPSKQKKNFNLPQPKMANTDLTR---LLKSDEIRKVLRAPNKRVIRATR-KLNPLTNNK 373
K P+KQ K PQ +++ D +R + K + + L A + + + K P +
Sbjct: 409 KMPAKQAKEAPAPQAEVSPKDESRVKAIAKPSKAKSSLDADDDYEAESPKEKPKPKEVDV 468
Query: 372 AMLKLNPYAAVLKRKAILELRRRKNLKALADAEKSGLKLSKRNPAMKAEKLRERRR 205
A LK +++ L L R+K L A+ + + +K E++R RRR
Sbjct: 469 AKLKEIKRQEEMEKNR-LALERKKKLAEKQAAKAAARAQKEAEKKLKREEMRARRR 523
>02_04_0073 - 19471254-19472681
Length = 475
Score = 29.1 bits (62), Expect = 4.5
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = -1
Query: 581 SPHSAGLTPYSGHGRHHRNKR 519
+P G +P S HG HHR+++
Sbjct: 20 APRPRGASPLSSHGHHHRSRK 40
>01_01_0612 +
4565422-4565481,4565597-4565671,4565760-4566332,
4566438-4566551,4566676-4567377
Length = 507
Score = 28.7 bits (61), Expect = 6.0
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +1
Query: 556 GVKPAECGLSPDDETSKMTSRSQLQEVQLVNIQELHTGDVA 678
G+ A G++ DD+ K SR L + ++N+ +GD A
Sbjct: 147 GLSCARGGVASDDDDDKQASRRALPPMPVLNLSSDSSGDAA 187
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,800,983
Number of Sequences: 37544
Number of extensions: 283645
Number of successful extensions: 808
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 794
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 808
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2291695380
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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