Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_T7_G16
         (807 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces...    28   1.8  
SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|c...    26   5.5  
SPBC215.01 ||SPBC3B9.20|GTPase activating protein|Schizosaccharo...    26   7.2  
SPBC2F12.11c |rep2||transcriptional activator Rep2|Schizosacchar...    25   9.6  

>SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 662

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +1

Query: 79  PRWKPPSTESPGRPLYCCERMYSDGRPNG 165
           PR+ PP+  +P  PL+      S G+P G
Sbjct: 254 PRYCPPAVVNPEHPLFLLYTSGSTGKPKG 282


>SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 566

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +3

Query: 567 APHGPRVGYSRRPRRPFCWLRPRSPPPGCGTGDRR 671
           AP    V  SRR  + + W +PR+ P   G   RR
Sbjct: 528 APLMRPVRSSRRVHKQYYWKKPRARPRSSGHSSRR 562


>SPBC215.01 ||SPBC3B9.20|GTPase activating
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 834

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 15/55 (27%), Positives = 24/55 (43%)
 Frame = -3

Query: 241 VDTTDFLNAERAHVDSTRGDHTVNGDHSDAHQSTFSHSSKEVSQGSPSKEASTED 77
           +DT       R H  ++R   T NG  +    S  + S    ++ +PS  + TED
Sbjct: 758 IDTNRIGKTFRGHKPASRPS-TANGTSNQNTTSEITTSETTATEKTPSNSSDTED 811


>SPBC2F12.11c |rep2||transcriptional activator
           Rep2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 219

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -2

Query: 533 RLPAQRGRVQRALRPEP 483
           R+  + GRVQ+ALRP P
Sbjct: 157 RMRRREGRVQKALRPTP 173


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,351,357
Number of Sequences: 5004
Number of extensions: 42690
Number of successful extensions: 156
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)