Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP08_T7_G16
(807 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0110 - 741968-742279 31 1.4
03_05_0366 - 23505755-23506441 30 1.9
03_05_0440 + 24322332-24322388,24323478-24323615,24323654-243237... 30 2.5
02_02_0469 + 10691648-10691692,10691755-10691907,10692043-106920... 30 2.5
07_01_0927 - 7784564-7784656,7785182-7785225,7785946-7785970,778... 29 3.3
04_01_0123 - 1283197-1283292,1283330-1284439,1284790-1285177,128... 29 3.3
06_03_1345 + 29478768-29479922 29 4.4
06_01_0501 - 3587390-3587528,3587922-3588031,3588122-3588187,358... 29 5.8
04_03_0457 + 16113087-16113249,16113468-16113498,16114138-161142... 29 5.8
07_03_0506 - 18861787-18861917,18862017-18862201,18862542-188626... 28 7.6
>05_01_0110 - 741968-742279
Length = 103
Score = 30.7 bits (66), Expect = 1.4
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = +3
Query: 555 AAPSAPHGPRVGYSRRPRRPFCWLRPRSPPPGCGT 659
A P APH +G SRR + C +PPPG T
Sbjct: 56 ARPGAPHRRGLGVSRRHQGSPCHRLGAAPPPGAPT 90
>03_05_0366 - 23505755-23506441
Length = 228
Score = 30.3 bits (65), Expect = 1.9
Identities = 17/39 (43%), Positives = 19/39 (48%), Gaps = 5/39 (12%)
Frame = +3
Query: 585 VGYSRRPRRPFCWLRPRSPPPGC-----GTGDRRLFCPR 686
VG R R+P W R SPPP TGD R + PR
Sbjct: 16 VGGGHRRRQPTTWWRVDSPPPASRRAAWSTGDGRRWLPR 54
>03_05_0440 +
24322332-24322388,24323478-24323615,24323654-24323736,
24325038-24325128,24326091-24326189,24326356-24326418,
24327182-24327259,24329354-24329543,24329812-24330065,
24330159-24330531,24331193-24331276,24332085-24332371,
24332495-24332542,24333194-24333220,24333951-24333987,
24334063-24334250,24334343-24334521,24334595-24334877,
24335481-24335717,24335798-24335988,24336552-24336561,
24336844-24336984,24337073-24337288,24338437-24338727,
24338852-24339025
Length = 1272
Score = 29.9 bits (64), Expect = 2.5
Identities = 23/69 (33%), Positives = 30/69 (43%)
Frame = -3
Query: 292 ETKQAPVRSQPEVVLSDVDTTDFLNAERAHVDSTRGDHTVNGDHSDAHQSTFSHSSKEVS 113
+ Q P RS + LS V +TD R + DS G ++G DA S S+E
Sbjct: 328 QDSQTPGRSGDRMFLSPVKSTD-----RKNADSEMGSSKLHGFQVDADFPEGSLGSREAE 382
Query: 112 QGSPSKEAS 86
G K AS
Sbjct: 383 TGDYPKYAS 391
>02_02_0469 +
10691648-10691692,10691755-10691907,10692043-10692093,
10692162-10692224,10692327-10693031,10693128-10693223,
10693307-10695547
Length = 1117
Score = 29.9 bits (64), Expect = 2.5
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = -3
Query: 220 NAERAHVDSTRGDHTVNGDHSDAHQSTFSHSSKEV-SQGSPSKEASTEDS 74
N ER VD GD T + DHS H + S V S +PS++ S+E +
Sbjct: 381 NTERPIVDKL-GDQTSSIDHSLQHTEEHNRSHDNVESSEAPSEDTSSESN 429
>07_01_0927 -
7784564-7784656,7785182-7785225,7785946-7785970,
7786357-7786497,7786590-7786619,7786686-7786762,
7786816-7786855,7787055-7787122,7787782-7789864
Length = 866
Score = 29.5 bits (63), Expect = 3.3
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +2
Query: 485 VPGVGRAVHGRVVLVAALDDALRGRSISTTWSPCXXFTASS 607
+P +GR +HGRV++ A DA S+ + C A++
Sbjct: 259 LPDLGRQLHGRVLIAALEGDAFVRSSLMDMYCKCGLLEAAA 299
>04_01_0123 -
1283197-1283292,1283330-1284439,1284790-1285177,
1285523-1287609
Length = 1226
Score = 29.5 bits (63), Expect = 3.3
Identities = 39/136 (28%), Positives = 53/136 (38%), Gaps = 4/136 (2%)
Frame = -3
Query: 526 QHNAAVYSAPYARNPFDHITDNEIDEYRRDVERKRRGNEYDTDLSES--EAISAAQMXXX 353
QH AV A NP+D + + D+ +R ER R E T+LS + EA +AA
Sbjct: 209 QHIRAV-QAILRENPYDPVLN---DDLKRWTERLR---ESVTNLSNAFEEAATAAHPEQP 261
Query: 352 XXXXXXXXXXSRDE--HRVLRIETKQAPVRSQPEVVLSDVDTTDFLNAERAHVDSTRGDH 179
R E R +R Q T D +N R HV S R D+
Sbjct: 262 PTGDANGEDPERRESPQRATPPPRGTGDLRDQINGRQEARRTRDNVNRSRRHVSSRRHDN 321
Query: 178 TVNGDHSDAHQSTFSH 131
GD S+ + +H
Sbjct: 322 GNRGDRSNEDRDQDNH 337
>06_03_1345 + 29478768-29479922
Length = 384
Score = 29.1 bits (62), Expect = 4.4
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Frame = -3
Query: 547 GIIQRGYQHNAAVYSAPYARNPFDHITD--NEIDEYRRDVERKRR 419
G+ + AA + AR PFDH+ E+ E D ER+RR
Sbjct: 38 GVAAASIRLRAARATGGDARQPFDHVPRGVEEVGEMEEDEERRRR 82
>06_01_0501 -
3587390-3587528,3587922-3588031,3588122-3588187,
3588293-3588410,3588499-3588554,3588647-3588766,
3588937-3589035,3589443-3589490,3589534-3589545,
3590353-3590418,3591412-3591471,3592061-3592162,
3592405-3592426,3592959-3593041,3593166-3593293,
3593775-3593881,3594376-3594845
Length = 601
Score = 28.7 bits (61), Expect = 5.8
Identities = 17/39 (43%), Positives = 19/39 (48%), Gaps = 5/39 (12%)
Frame = +3
Query: 546 PFEAAPSAPHGPR-----VGYSRRPRRPFCWLRPRSPPP 647
P AP P PR V ++ P R F W PRSPPP
Sbjct: 41 PTTRAPLLPSPPRLPPLLVPFAAVPARSFSWY-PRSPPP 78
>04_03_0457 +
16113087-16113249,16113468-16113498,16114138-16114271,
16114370-16114518,16114974-16115039,16115159-16115206,
16115293-16115496,16115614-16115637
Length = 272
Score = 28.7 bits (61), Expect = 5.8
Identities = 18/49 (36%), Positives = 20/49 (40%)
Frame = +3
Query: 519 LCW*PRWMMPFEAAPSAPHGPRVGYSRRPRRPFCWLRPRSPPPGCGTGD 665
LCW P +AP+ P P R P RP R R P GC D
Sbjct: 17 LCWLP------SSAPTPPRRPTTLSRRAPPRPLRATRRRLMPGGCFGSD 59
>07_03_0506 -
18861787-18861917,18862017-18862201,18862542-18862613,
18863163-18863234,18863596-18863667,18864371-18864518,
18864864-18865922,18866663-18866762
Length = 612
Score = 28.3 bits (60), Expect = 7.6
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = -3
Query: 535 RGYQHNAAVYSAPYARNPFDHITDNEIDEYRRDVERKRRGNEYDT 401
R Q AA APYA++ D ++ ++ R E R GN+ T
Sbjct: 562 RRAQKLAAAREAPYAKSRTQFTRDMQMAKHHRPHESSRSGNDEST 606
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,270,709
Number of Sequences: 37544
Number of extensions: 367647
Number of successful extensions: 1446
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1396
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1445
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2197677108
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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