Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_T7_G11
         (903 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70136-1|AAB09089.1| 1404|Homo sapiens megakaryocyte stimulating...    31   5.7  
AL133553-1|CAC36090.1| 1404|Homo sapiens proteoglycan 4 protein.       31   5.7  
AK131434-1|BAD18580.1|  933|Homo sapiens protein ( Homo sapiens ...    30   10.0 

>U70136-1|AAB09089.1| 1404|Homo sapiens megakaryocyte stimulating
           factor protein.
          Length = 1404

 Score = 31.1 bits (67), Expect = 5.7
 Identities = 25/99 (25%), Positives = 30/99 (30%), Gaps = 4/99 (4%)
 Frame = +2

Query: 533 PGXPQXXTPSDPXGXXXXXPANPVV---PGXXXFPNPNLXKNSPTXXLSTXPRXXXFXXP 703
           P  P   TP +P       P    +   P     P P   K++PT      P       P
Sbjct: 347 PKEPTPTTPKEPASTTPKEPTPTTIKSAPTTPKEPAPTTTKSAPTTPKEPAPTTTKEPAP 406

Query: 704 AXXKXXAP-LPXNPXPQNXNXXXXSPXKXPIPXPPXXXA 817
              K  AP     P P        +P K P P  P   A
Sbjct: 407 TTPKEPAPTTTKEPAPTTTKSAPTTP-KEPAPTTPKKPA 444



 Score = 31.1 bits (67), Expect = 5.7
 Identities = 21/95 (22%), Positives = 26/95 (27%)
 Frame = +2

Query: 533 PGXPQXXTPSDPXGXXXXXPANPVVPGXXXFPNPNLXKNSPTXXLSTXPRXXXFXXPAXX 712
           P  P+   P+ P       P  P  P     P+P   K        + P       P   
Sbjct: 484 PTAPKKPAPTTPKEPAPTTPKEPA-PTTTKEPSPTTPKEPAPTTTKSAPTTTKEPAPTTT 542

Query: 713 KXXAPLPXNPXPQNXNXXXXSPXKXPIPXPPXXXA 817
           K     P  P P        +  K P P  P   A
Sbjct: 543 KSAPTTPKEPSPTTTKEPAPTTPKEPAPTTPKKPA 577


>AL133553-1|CAC36090.1| 1404|Homo sapiens proteoglycan 4 protein.
          Length = 1404

 Score = 31.1 bits (67), Expect = 5.7
 Identities = 25/99 (25%), Positives = 30/99 (30%), Gaps = 4/99 (4%)
 Frame = +2

Query: 533 PGXPQXXTPSDPXGXXXXXPANPVV---PGXXXFPNPNLXKNSPTXXLSTXPRXXXFXXP 703
           P  P   TP +P       P    +   P     P P   K++PT      P       P
Sbjct: 347 PKEPTPTTPKEPASTTPKEPTPTTIKSAPTTPKEPAPTTTKSAPTTPKEPAPTTTKEPAP 406

Query: 704 AXXKXXAP-LPXNPXPQNXNXXXXSPXKXPIPXPPXXXA 817
              K  AP     P P        +P K P P  P   A
Sbjct: 407 TTPKEPAPTTTKEPAPTTTKSAPTTP-KEPAPTTPKKPA 444



 Score = 31.1 bits (67), Expect = 5.7
 Identities = 21/95 (22%), Positives = 26/95 (27%)
 Frame = +2

Query: 533 PGXPQXXTPSDPXGXXXXXPANPVVPGXXXFPNPNLXKNSPTXXLSTXPRXXXFXXPAXX 712
           P  P+   P+ P       P  P  P     P+P   K        + P       P   
Sbjct: 484 PTAPKKPAPTTPKEPAPTTPKEPA-PTTTKEPSPTTPKEPAPTTTKSAPTTTKEPAPTTT 542

Query: 713 KXXAPLPXNPXPQNXNXXXXSPXKXPIPXPPXXXA 817
           K     P  P P        +  K P P  P   A
Sbjct: 543 KSAPTTPKEPSPTTTKEPAPTTPKEPAPTTPKKPA 577


>AK131434-1|BAD18580.1|  933|Homo sapiens protein ( Homo sapiens
           cDNA FLJ16561 fis, clone SYNOV4003981, moderately
           similar to Homo sapiens proteoglycan 4, (megakaryocyte
           stimulating ).
          Length = 933

 Score = 30.3 bits (65), Expect = 10.0
 Identities = 22/90 (24%), Positives = 27/90 (30%), Gaps = 4/90 (4%)
 Frame = +2

Query: 533 PGXPQXXTPSDPXGXXXXXPANPVV---PGXXXFPNPNLXKNSPTXXLSTXPRXXXFXXP 703
           P  P   TP +P       P    +   P     P P   K++PT      P       P
Sbjct: 306 PKEPTPTTPKEPASTTPKEPTPTTIKSAPTTPKEPAPTTTKSAPTTPKEPAPTTTKEPAP 365

Query: 704 AXXKXXAP-LPXNPXPQNXNXXXXSPXKXP 790
              K  AP  P  P P        +  K P
Sbjct: 366 TTPKEPAPTTPETPPPTTSEVSTPTTTKEP 395


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 84,260,307
Number of Sequences: 237096
Number of extensions: 1372115
Number of successful extensions: 2833
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2542
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2811
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11659288620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)