Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_T7_G02
         (844 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   3.3  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   4.4  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 15/67 (22%), Positives = 21/67 (31%)
 Frame = +2

Query: 479 PXXSXAXPXNXPCXXPTRPXSPPXXRXSPRXXLXXXFGSPXXLXXGHPPPSXPXXDASPA 658
           P    + P + P   P  P  PP    +P          P       PPP+     A+P 
Sbjct: 429 PSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAPAAPV 488

Query: 659 XXXSXXP 679
              +  P
Sbjct: 489 ASIAELP 495



 Score = 26.2 bits (55), Expect = 5.8
 Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
 Frame = +2

Query: 623 PPSXPXXDASPAXXXSXXPA-PXXAXWGGPLPPQSRLSXTPPXLPCXTKXSP 775
           PPS P   A P+   S  P+ P  A    PLPP + ++   P LP     +P
Sbjct: 420 PPSLPP-SAPPSLPPSAPPSLPMGAPAAPPLPPSAPIA---PPLPAGMPAAP 467


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 16/60 (26%), Positives = 20/60 (33%)
 Frame = +2

Query: 596  PXXLXXGHPPPSXPXXDASPAXXXSXXPAPXXAXWGGPLPPQSRLSXTPPXLPCXTKXSP 775
            P     G PP   P   A P    S    P  A  G P  P+  ++  P  +P      P
Sbjct: 1084 PVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVP 1143


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,430,853
Number of Sequences: 5004
Number of extensions: 15720
Number of successful extensions: 48
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 416455520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)