Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP08_T7_G02
(844 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical pr... 37 0.016
Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical pr... 37 0.021
Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical pr... 37 0.021
Z54238-1|CAA90992.2| 281|Caenorhabditis elegans Hypothetical pr... 34 0.15
U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase pr... 31 1.4
L19948-1|AAC27384.1| 763|Caenorhabditis elegans RNA helicase pr... 31 1.4
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 31 1.4
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 31 1.4
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 31 1.4
AF000197-1|AAB52901.2| 763|Caenorhabditis elegans Germ-line hel... 31 1.4
Z81094-7|CAB03153.2| 960|Caenorhabditis elegans Hypothetical pr... 30 2.4
U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical pr... 26 2.6
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 29 4.1
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 29 4.1
Z68008-5|CAD91696.1| 1160|Caenorhabditis elegans Hypothetical pr... 28 7.2
U58751-5|AAN84882.1| 781|Caenorhabditis elegans Wasp (actin cyt... 28 7.2
U58751-4|AAN84881.1| 607|Caenorhabditis elegans Wasp (actin cyt... 28 7.2
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 28 7.2
AF000193-3|AAB52890.1| 259|Caenorhabditis elegans Hypothetical ... 28 7.2
>Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical
protein E02A10.2 protein.
Length = 385
Score = 37.1 bits (82), Expect = 0.016
Identities = 30/106 (28%), Positives = 30/106 (28%)
Frame = -1
Query: 682 GXXXRGXXXGGRVXXRXRGRGMXGXEXXGGSEXXXXXXAXAXSGTGG*GXXXGXGAGGVS 503
G G GG G G G GG G GG G G G GG
Sbjct: 78 GCGGGGGCGGGGGGCGGGGGGCGGGGGCGGGCAPPPPPPACGGGCGGGGGGCGGGCGGGG 137
Query: 502 RXGXGXXGXXKXCGGXXXXXXXXXXGXXXXXXXXGGXRXGVXGXGG 365
G G G CGG G GG G G GG
Sbjct: 138 GGGCGGGGGG-GCGGGGGGCGGGGGGCGGGGGGCGGGGGGGCGGGG 182
Score = 30.7 bits (66), Expect = 1.4
Identities = 22/70 (31%), Positives = 22/70 (31%)
Frame = -1
Query: 667 GXXXGGRVXXRXRGRGMXGXEXXGGSEXXXXXXAXAXSGTGG*GXXXGXGAGGVSRXGXG 488
G GG G G G GG G GG G G G GG G G
Sbjct: 26 GGGGGGCGGGCGGGGGCGGGGGCGGGCAPPPPPPACGGGCGGGGGGCGGGGGGCG-GGGG 84
Query: 487 XXGXXKXCGG 458
G CGG
Sbjct: 85 CGGGGGGCGG 94
Score = 28.3 bits (60), Expect = 7.2
Identities = 18/61 (29%), Positives = 18/61 (29%)
Frame = -1
Query: 547 GG*GXXXGXGAGGVSRXGXGXXGXXKXCGGXXXXXXXXXXGXXXXXXXXGGXRXGVXGXG 368
GG G G G GG G CGG G GG G G G
Sbjct: 34 GGCGGGGGCGGGGGCGGGCAPPPPPPACGGGCGGGGGGCGGGGGGCGGGGGCGGGGGGCG 93
Query: 367 G 365
G
Sbjct: 94 G 94
Score = 27.9 bits (59), Expect = 9.5
Identities = 26/95 (27%), Positives = 26/95 (27%)
Frame = -1
Query: 742 GSXGETGLRGERTXPPXXXXGXXXRGXXXGGRVXXRXRGRGMXGXEXXGGSEXXXXXXAX 563
G G G G PP GG G G G GG
Sbjct: 97 GGCGGGGGCGGGCAPPPPPPACGGGCGGGGGGCGGGCGGGGGGGCGGGGGGGCGGGGGGC 156
Query: 562 AXSGTGG*GXXXGXGAGGVSRXGXGXXGXXKXCGG 458
G G G G G GG G G G CGG
Sbjct: 157 GGGGGGCGGGGGGCGGGGGGGCGGGGGG---GCGG 188
>Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 36.7 bits (81), Expect = 0.021
Identities = 36/129 (27%), Positives = 36/129 (27%), Gaps = 3/129 (2%)
Frame = -1
Query: 742 GSXGETGLRGERTXPPXXXXGXXXRGXXX---GGRVXXRXRGRGMXGXEXXGGSEXXXXX 572
G G G G PP G G GG G G G GG
Sbjct: 61 GGGGGCGGGGGCAPPPAPCGGGCGGGGGGCGGGGGGCGGGGGCGGGGGGCGGGGGGCGGG 120
Query: 571 XAXAXSGTGG*GXXXGXGAGGVSRXGXGXXGXXKXCGGXXXXXXXXXXGXXXXXXXXGGX 392
G GG G G G GG S G G G CGG G GG
Sbjct: 121 GGGCGGGGGGCGGGGGGGCGGGSSGGCG-GGSSGGCGGGGGGGCGGGGGGGCGGGSSGGG 179
Query: 391 RXGVXGXGG 365
V GG
Sbjct: 180 GYAVAPSGG 188
Score = 33.9 bits (74), Expect = 0.15
Identities = 24/84 (28%), Positives = 25/84 (29%)
Frame = -1
Query: 613 GXEXXGGSEXXXXXXAXAXSGTGG*GXXXGXGAGGVSRXGXGXXGXXKXCGGXXXXXXXX 434
G GG A G GG G G G GG G G G CGG
Sbjct: 62 GGGGCGGGGGCAPPPAPCGGGCGGGGGGCGGGGGGCG-GGGGCGGGGGGCGGGGGGCGGG 120
Query: 433 XXGXXXXXXXXGGXRXGVXGXGGA 362
G GG G G G +
Sbjct: 121 GGGCGGGGGGCGGGGGGGCGGGSS 144
Score = 31.5 bits (68), Expect = 0.78
Identities = 29/107 (27%), Positives = 30/107 (28%), Gaps = 2/107 (1%)
Frame = -1
Query: 667 GXXXGGRVXXRXRGRGMXGXEXXGGSEXXXXXXAXAXSGTGG*GXXXGXGAGG--VSRXG 494
G GG G G G GG A A SG GG G G GG V+ G
Sbjct: 149 GGSSGGCGGGGGGGCGGGGGGGCGGGSSGGGGYAVAPSGGGGCGGGGSSGGGGYAVAPSG 208
Query: 493 XGXXGXXKXCGGXXXXXXXXXXGXXXXXXXXGGXRXGVXGXGGAXVS 353
G G GG G G G G S
Sbjct: 209 GGGCGGGGSSGGGGYASAPSGGGGYATSGGGGSGGYATGGSSGGGYS 255
Score = 29.1 bits (62), Expect = 4.1
Identities = 24/97 (24%), Positives = 25/97 (25%)
Frame = -1
Query: 655 GGRVXXRXRGRGMXGXEXXGGSEXXXXXXAXAXSGTGG*GXXXGXGAGGVSRXGXGXXGX 476
GG G G G GG + G G G G G GG G G G
Sbjct: 114 GGGCGGGGGGCGGGGGGCGGGGGGGCGGGSSGGCGGGSSGGCGGGGGGGCGGGGGGGCGG 173
Query: 475 XKXCGGXXXXXXXXXXGXXXXXXXXGGXRXGVXGXGG 365
GG G GG GG
Sbjct: 174 GSSGGGGYAVAPSGGGGCGGGGSSGGGGYAVAPSGGG 210
Score = 27.9 bits (59), Expect = 9.5
Identities = 18/64 (28%), Positives = 19/64 (29%)
Frame = -1
Query: 556 SGTGG*GXXXGXGAGGVSRXGXGXXGXXKXCGGXXXXXXXXXXGXXXXXXXXGGXRXGVX 377
+G GG G G G GG G G CGG G G
Sbjct: 25 AGGGGGGGGCGGGCGGGCGGGGGCAPPPAPCGGGCGGGGGGCGGGGGCAPPPAPCGGGCG 84
Query: 376 GXGG 365
G GG
Sbjct: 85 GGGG 88
>Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 36.7 bits (81), Expect = 0.021
Identities = 36/129 (27%), Positives = 36/129 (27%), Gaps = 3/129 (2%)
Frame = -1
Query: 742 GSXGETGLRGERTXPPXXXXGXXXRGXXX---GGRVXXRXRGRGMXGXEXXGGSEXXXXX 572
G G G G PP G G GG G G G GG
Sbjct: 61 GGGGGCGGGGGCAPPPAPCGGGCGGGGGGCGGGGGGCGGGGGCGGGGGGCGGGGGGCGGG 120
Query: 571 XAXAXSGTGG*GXXXGXGAGGVSRXGXGXXGXXKXCGGXXXXXXXXXXGXXXXXXXXGGX 392
G GG G G G GG S G G G CGG G GG
Sbjct: 121 GGGCGGGGGGCGGGGGGGCGGGSSGGCG-GGSSGGCGGGGGGGCGGGGGGGCGGGSSGGG 179
Query: 391 RXGVXGXGG 365
V GG
Sbjct: 180 GYAVAPSGG 188
Score = 33.9 bits (74), Expect = 0.15
Identities = 24/84 (28%), Positives = 25/84 (29%)
Frame = -1
Query: 613 GXEXXGGSEXXXXXXAXAXSGTGG*GXXXGXGAGGVSRXGXGXXGXXKXCGGXXXXXXXX 434
G GG A G GG G G G GG G G G CGG
Sbjct: 62 GGGGCGGGGGCAPPPAPCGGGCGGGGGGCGGGGGGCG-GGGGCGGGGGGCGGGGGGCGGG 120
Query: 433 XXGXXXXXXXXGGXRXGVXGXGGA 362
G GG G G G +
Sbjct: 121 GGGCGGGGGGCGGGGGGGCGGGSS 144
Score = 31.5 bits (68), Expect = 0.78
Identities = 29/107 (27%), Positives = 30/107 (28%), Gaps = 2/107 (1%)
Frame = -1
Query: 667 GXXXGGRVXXRXRGRGMXGXEXXGGSEXXXXXXAXAXSGTGG*GXXXGXGAGG--VSRXG 494
G GG G G G GG A A SG GG G G GG V+ G
Sbjct: 149 GGSSGGCGGGGGGGCGGGGGGGCGGGSSGGGGYAVAPSGGGGCGGGGSSGGGGYAVAPSG 208
Query: 493 XGXXGXXKXCGGXXXXXXXXXXGXXXXXXXXGGXRXGVXGXGGAXVS 353
G G GG G G G G S
Sbjct: 209 GGGCGGGGSSGGGGYASAPSGGGGYATSGGGGSGGYATGGSSGGGYS 255
Score = 29.1 bits (62), Expect = 4.1
Identities = 24/97 (24%), Positives = 25/97 (25%)
Frame = -1
Query: 655 GGRVXXRXRGRGMXGXEXXGGSEXXXXXXAXAXSGTGG*GXXXGXGAGGVSRXGXGXXGX 476
GG G G G GG + G G G G G GG G G G
Sbjct: 114 GGGCGGGGGGCGGGGGGCGGGGGGGCGGGSSGGCGGGSSGGCGGGGGGGCGGGGGGGCGG 173
Query: 475 XKXCGGXXXXXXXXXXGXXXXXXXXGGXRXGVXGXGG 365
GG G GG GG
Sbjct: 174 GSSGGGGYAVAPSGGGGCGGGGSSGGGGYAVAPSGGG 210
Score = 27.9 bits (59), Expect = 9.5
Identities = 18/64 (28%), Positives = 19/64 (29%)
Frame = -1
Query: 556 SGTGG*GXXXGXGAGGVSRXGXGXXGXXKXCGGXXXXXXXXXXGXXXXXXXXGGXRXGVX 377
+G GG G G G GG G G CGG G G
Sbjct: 25 AGGGGGGGGCGGGCGGGCGGGGGCAPPPAPCGGGCGGGGGGCGGGGGCAPPPAPCGGGCG 84
Query: 376 GXGG 365
G GG
Sbjct: 85 GGGG 88
>Z54238-1|CAA90992.2| 281|Caenorhabditis elegans Hypothetical
protein T28C6.1 protein.
Length = 281
Score = 33.9 bits (74), Expect = 0.15
Identities = 30/104 (28%), Positives = 33/104 (31%), Gaps = 2/104 (1%)
Frame = -1
Query: 670 RGXXXGGRVXXRXRGRGMXGXEXXGGSEXXXXXXAXAXSGT--GG*GXXXGXGAGGVSRX 497
RG GGR GRG G GGS G+ GG G G GG S
Sbjct: 60 RGGSGGGRGGGSGGGRGGSGGAGAGGSGSGSGGWGGQDGGSSAGGWGGSQGGSQGGSS-- 117
Query: 496 GXGXXGXXKXCGGXXXXXXXXXXGXXXXXXXXGGXRXGVXGXGG 365
G G + G G GG + G G GG
Sbjct: 118 -GGWGGSSRSDSGSGQGGWGGQQGGNSNAGGWGGSQGGQNGGGG 160
Score = 32.7 bits (71), Expect = 0.34
Identities = 27/101 (26%), Positives = 29/101 (28%)
Frame = -1
Query: 667 GXXXGGRVXXRXRGRGMXGXEXXGGSEXXXXXXAXAXSGTGG*GXXXGXGAGGVSRXGXG 488
G GG+ RG G G GGS+ GG G G G G G
Sbjct: 149 GGSQGGQNGGGGRG-GSGGQGGWGGSQDGGSQGGWGGQNGGGQGGNQGGGGGRGGNQGGE 207
Query: 487 XXGXXKXCGGXXXXXXXXXXGXXXXXXXXGGXRXGVXGXGG 365
G G G GG R G G GG
Sbjct: 208 QGGWGGQGGSQGGSQGGSQGGWGNQGGQQGGGRGGQQGPGG 248
Score = 29.1 bits (62), Expect = 4.1
Identities = 29/107 (27%), Positives = 31/107 (28%), Gaps = 1/107 (0%)
Frame = -1
Query: 667 GXXXGGRVXXRXRGRGMXGXEXXGGSEXXXXXXAXAXSGTGG*GXXXGXGA-GGVSRXGX 491
G GG R GRG G GGS A +G G G G GG S G
Sbjct: 46 GASAGGTGGGRGGGRGGSGGGRGGGSGGGRGGSGGAGAGGSGSGSGGWGGQDGGSSAGGW 105
Query: 490 GXXGXXKXCGGXXXXXXXXXXGXXXXXXXXGGXRXGVXGXGGAXVSQ 350
G G GG + G GG SQ
Sbjct: 106 GGSQGGSQGGSSGGWGGSSRSDSGSGQGGWGGQQGGNSNAGGWGGSQ 152
>U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 30.7 bits (66), Expect = 1.4
Identities = 24/88 (27%), Positives = 26/88 (29%)
Frame = -1
Query: 742 GSXGETGLRGERTXPPXXXXGXXXRGXXXGGRVXXRXRGRGMXGXEXXGGSEXXXXXXAX 563
G G TG G T G GG+ G G GG
Sbjct: 37 GKNGGTGFGGGNTGGSGFGGGNTGGSGFGGGKAGGSGFGGGNTCGSGFGGGSTGGSPYGG 96
Query: 562 AXSGTGG*GXXXGXGAGGVSRXGXGXXG 479
A SG GG G G+G S G G
Sbjct: 97 ASSGFGGSTATSGFGSGEKSSAFGGSGG 124
>L19948-1|AAC27384.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 30.7 bits (66), Expect = 1.4
Identities = 24/88 (27%), Positives = 26/88 (29%)
Frame = -1
Query: 742 GSXGETGLRGERTXPPXXXXGXXXRGXXXGGRVXXRXRGRGMXGXEXXGGSEXXXXXXAX 563
G G TG G T G GG+ G G GG
Sbjct: 37 GKNGGTGFGGGNTGGSGFGGGNTGGSGFGGGKTGGSGFGGGNTCGSGFGGGSTGGSPYGG 96
Query: 562 AXSGTGG*GXXXGXGAGGVSRXGXGXXG 479
A SG GG G G+G S G G
Sbjct: 97 ASSGFGGSTATSGFGSGEKSSAFGGSGG 124
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 30.7 bits (66), Expect = 1.4
Identities = 19/52 (36%), Positives = 21/52 (40%)
Frame = +2
Query: 590 GSPXXLXXGHPPPSXPXXDASPAXXXSXXPAPXXAXWGGPLPPQSRLSXTPP 745
GSP G PPP P SP + P P G P PP + S PP
Sbjct: 245 GSPPLAGSGSPPP--PPAAGSPPPPRTGSPPPPPT--GSPPPPPAGGSPPPP 292
Score = 29.5 bits (63), Expect = 3.1
Identities = 17/44 (38%), Positives = 19/44 (43%)
Frame = +2
Query: 614 GHPPPSXPXXDASPAXXXSXXPAPXXAXWGGPLPPQSRLSXTPP 745
G PPP P SP S P P A G P PP++ PP
Sbjct: 235 GSPPPPPP-PKGSPPLAGSGSPPPPPAA-GSPPPPRTGSPPPPP 276
Score = 29.1 bits (62), Expect = 4.1
Identities = 27/87 (31%), Positives = 28/87 (32%)
Frame = +2
Query: 494 AXPXNXPCXXPTRPXSPPXXRXSPRXXLXXXFGSPXXLXXGHPPPSXPXXDASPAXXXSX 673
A P P P SPP S GSP G PPP P + P
Sbjct: 231 APPAGSPPPPPPPKGSPPLA-GSGSPPPPPAAGSPPPPRTGSPPP--PPTGSPPPPPAGG 287
Query: 674 XPAPXXAXWGGPLPPQSRLSXTPPXLP 754
P P A P PP R S LP
Sbjct: 288 SPPPPRAG-SPPPPPPPRGSPPTGSLP 313
Score = 27.9 bits (59), Expect = 9.5
Identities = 19/56 (33%), Positives = 20/56 (35%), Gaps = 4/56 (7%)
Frame = +2
Query: 590 GSPXXLXXGHPPPSXPXXDASPAXXXSXXPAPXXAXWGGP----LPPQSRLSXTPP 745
GSP G PPP P SP + P P G P LPP PP
Sbjct: 270 GSPPPPPTGSPPP--PPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPP 323
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 30.7 bits (66), Expect = 1.4
Identities = 19/52 (36%), Positives = 21/52 (40%)
Frame = +2
Query: 590 GSPXXLXXGHPPPSXPXXDASPAXXXSXXPAPXXAXWGGPLPPQSRLSXTPP 745
GSP G PPP P SP + P P G P PP + S PP
Sbjct: 266 GSPPLAGSGSPPP--PPAAGSPPPPRTGSPPPPPT--GSPPPPPAGGSPPPP 313
Score = 29.5 bits (63), Expect = 3.1
Identities = 17/44 (38%), Positives = 19/44 (43%)
Frame = +2
Query: 614 GHPPPSXPXXDASPAXXXSXXPAPXXAXWGGPLPPQSRLSXTPP 745
G PPP P SP S P P A G P PP++ PP
Sbjct: 256 GSPPPPPP-PKGSPPLAGSGSPPPPPAA-GSPPPPRTGSPPPPP 297
Score = 29.1 bits (62), Expect = 4.1
Identities = 27/87 (31%), Positives = 28/87 (32%)
Frame = +2
Query: 494 AXPXNXPCXXPTRPXSPPXXRXSPRXXLXXXFGSPXXLXXGHPPPSXPXXDASPAXXXSX 673
A P P P SPP S GSP G PPP P + P
Sbjct: 252 APPAGSPPPPPPPKGSPPLA-GSGSPPPPPAAGSPPPPRTGSPPP--PPTGSPPPPPAGG 308
Query: 674 XPAPXXAXWGGPLPPQSRLSXTPPXLP 754
P P A P PP R S LP
Sbjct: 309 SPPPPRAG-SPPPPPPPRGSPPTGSLP 334
Score = 27.9 bits (59), Expect = 9.5
Identities = 19/56 (33%), Positives = 20/56 (35%), Gaps = 4/56 (7%)
Frame = +2
Query: 590 GSPXXLXXGHPPPSXPXXDASPAXXXSXXPAPXXAXWGGP----LPPQSRLSXTPP 745
GSP G PPP P SP + P P G P LPP PP
Sbjct: 291 GSPPPPPTGSPPP--PPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPP 344
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 30.7 bits (66), Expect = 1.4
Identities = 19/52 (36%), Positives = 21/52 (40%)
Frame = +2
Query: 590 GSPXXLXXGHPPPSXPXXDASPAXXXSXXPAPXXAXWGGPLPPQSRLSXTPP 745
GSP G PPP P SP + P P G P PP + S PP
Sbjct: 251 GSPPLAGSGSPPP--PPAAGSPPPPRTGSPPPPPT--GSPPPPPAGGSPPPP 298
Score = 29.5 bits (63), Expect = 3.1
Identities = 17/44 (38%), Positives = 19/44 (43%)
Frame = +2
Query: 614 GHPPPSXPXXDASPAXXXSXXPAPXXAXWGGPLPPQSRLSXTPP 745
G PPP P SP S P P A G P PP++ PP
Sbjct: 241 GSPPPPPP-PKGSPPLAGSGSPPPPPAA-GSPPPPRTGSPPPPP 282
Score = 29.1 bits (62), Expect = 4.1
Identities = 27/87 (31%), Positives = 28/87 (32%)
Frame = +2
Query: 494 AXPXNXPCXXPTRPXSPPXXRXSPRXXLXXXFGSPXXLXXGHPPPSXPXXDASPAXXXSX 673
A P P P SPP S GSP G PPP P + P
Sbjct: 237 APPAGSPPPPPPPKGSPPLA-GSGSPPPPPAAGSPPPPRTGSPPP--PPTGSPPPPPAGG 293
Query: 674 XPAPXXAXWGGPLPPQSRLSXTPPXLP 754
P P A P PP R S LP
Sbjct: 294 SPPPPRAG-SPPPPPPPRGSPPTGSLP 319
Score = 27.9 bits (59), Expect = 9.5
Identities = 19/56 (33%), Positives = 20/56 (35%), Gaps = 4/56 (7%)
Frame = +2
Query: 590 GSPXXLXXGHPPPSXPXXDASPAXXXSXXPAPXXAXWGGP----LPPQSRLSXTPP 745
GSP G PPP P SP + P P G P LPP PP
Sbjct: 276 GSPPPPPTGSPPP--PPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPP 329
>AF000197-1|AAB52901.2| 763|Caenorhabditis elegans Germ-line
helicase protein 1 protein.
Length = 763
Score = 30.7 bits (66), Expect = 1.4
Identities = 24/88 (27%), Positives = 26/88 (29%)
Frame = -1
Query: 742 GSXGETGLRGERTXPPXXXXGXXXRGXXXGGRVXXRXRGRGMXGXEXXGGSEXXXXXXAX 563
G G TG G T G GG+ G G GG
Sbjct: 37 GKNGGTGFGGGNTGGSGFGGGNTGGSGFGGGKTGGSGFGGGNTCGSGFGGGSTGGSPYGG 96
Query: 562 AXSGTGG*GXXXGXGAGGVSRXGXGXXG 479
A SG GG G G+G S G G
Sbjct: 97 ASSGFGGSTATSGFGSGEKSSAFGGSGG 124
>Z81094-7|CAB03153.2| 960|Caenorhabditis elegans Hypothetical
protein F58G11.2 protein.
Length = 960
Score = 29.9 bits (64), Expect = 2.4
Identities = 18/58 (31%), Positives = 20/58 (34%)
Frame = -1
Query: 682 GXXXRGXXXGGRVXXRXRGRGMXGXEXXGGSEXXXXXXAXAXSGTGG*GXXXGXGAGG 509
G RG G GRG G GG + G+GG G G G GG
Sbjct: 804 GFGQRGGYGGRGGGFGGTGRGRGGGVFGGGGRGGDFGGSGNFGGSGGGGSFGGSGGGG 861
Score = 29.5 bits (63), Expect = 3.1
Identities = 21/65 (32%), Positives = 23/65 (35%)
Frame = -1
Query: 682 GXXXRGXXXGGRVXXRXRGRGMXGXEXXGGSEXXXXXXAXAXSGTGG*GXXXGXGAGGVS 503
G RG GG R RG G+ G GG + G G G G GGV
Sbjct: 810 GYGGRGGGFGGT--GRGRGGGVFGGGGRGGDFGGSGNFGGSGGGGSFGGSGGGGGFGGVK 867
Query: 502 RXGXG 488
G G
Sbjct: 868 PSGFG 872
>U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical
protein C01G8.9a protein.
Length = 1724
Score = 25.8 bits (54), Expect(2) = 2.6
Identities = 12/33 (36%), Positives = 14/33 (42%)
Frame = +2
Query: 677 PAPXXAXWGGPLPPQSRLSXTPPXLPCXTKXSP 775
P P GGP+PP + PP P SP
Sbjct: 807 PRPPYPYPGGPVPPGPPQNRMPPPPPAQGAPSP 839
Score = 22.2 bits (45), Expect(2) = 2.6
Identities = 12/44 (27%), Positives = 14/44 (31%)
Frame = +2
Query: 500 PXNXPCXXPTRPXSPPXXRXSPRXXLXXXFGSPXXLXXGHPPPS 631
P P P P P P G+P G PPP+
Sbjct: 723 PQQHPGPYPGYPGYGPPGAMRPPAGFAPPPGAPYGYPPGAPPPA 766
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 29.1 bits (62), Expect = 4.1
Identities = 17/62 (27%), Positives = 20/62 (32%), Gaps = 4/62 (6%)
Frame = +2
Query: 620 PPPSX----PXXDASPAXXXSXXPAPXXAXWGGPLPPQSRLSXTPPXLPCXTKXSPXXLL 787
PPPS P +P P P W P PP + PP +P P
Sbjct: 266 PPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRF 325
Query: 788 XP 793
P
Sbjct: 326 GP 327
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 29.1 bits (62), Expect = 4.1
Identities = 17/62 (27%), Positives = 20/62 (32%), Gaps = 4/62 (6%)
Frame = +2
Query: 620 PPPSX----PXXDASPAXXXSXXPAPXXAXWGGPLPPQSRLSXTPPXLPCXTKXSPXXLL 787
PPPS P +P P P W P PP + PP +P P
Sbjct: 276 PPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRF 335
Query: 788 XP 793
P
Sbjct: 336 GP 337
>Z68008-5|CAD91696.1| 1160|Caenorhabditis elegans Hypothetical protein
R08B4.1b protein.
Length = 1160
Score = 28.3 bits (60), Expect = 7.2
Identities = 24/85 (28%), Positives = 26/85 (30%)
Frame = -1
Query: 742 GSXGETGLRGERTXPPXXXXGXXXRGXXXGGRVXXRXRGRGMXGXEXXGGSEXXXXXXAX 563
GS G G G G G GG G G G GG A
Sbjct: 784 GSSGGGGGGGNGGSGGGGGGGGGGSGGSGGGGSNSNSGGGGGNGGGGNGGGGNGNGGGAG 843
Query: 562 AXSGTGG*GXXXGXGAGGVSRXGXG 488
+G G G G GAG + G G
Sbjct: 844 DGNGGAGAGNGNGAGAGNGNGAGAG 868
>U58751-5|AAN84882.1| 781|Caenorhabditis elegans Wasp (actin
cytoskeleton modulator)homolog protein 1, isoform b
protein.
Length = 781
Score = 28.3 bits (60), Expect = 7.2
Identities = 24/82 (29%), Positives = 26/82 (31%)
Frame = +2
Query: 500 PXNXPCXXPTRPXSPPXXRXSPRXXLXXXFGSPXXLXXGHPPPSXPXXDASPAXXXSXXP 679
P N P P P PP P+ FG PPP P PA P
Sbjct: 601 PENRPHAVPPPPPPPP-----PQS-----FGMAPISSAAPPPPPPPPPMGLPAVGAGAPP 650
Query: 680 APXXAXWGGPLPPQSRLSXTPP 745
P G P S L+ PP
Sbjct: 651 PPPPPPPSGAGGPASVLAKLPP 672
>U58751-4|AAN84881.1| 607|Caenorhabditis elegans Wasp (actin
cytoskeleton modulator)homolog protein 1, isoform a
protein.
Length = 607
Score = 28.3 bits (60), Expect = 7.2
Identities = 24/82 (29%), Positives = 26/82 (31%)
Frame = +2
Query: 500 PXNXPCXXPTRPXSPPXXRXSPRXXLXXXFGSPXXLXXGHPPPSXPXXDASPAXXXSXXP 679
P N P P P PP P+ FG PPP P PA P
Sbjct: 427 PENRPHAVPPPPPPPP-----PQS-----FGMAPISSAAPPPPPPPPPMGLPAVGAGAPP 476
Query: 680 APXXAXWGGPLPPQSRLSXTPP 745
P G P S L+ PP
Sbjct: 477 PPPPPPPSGAGGPASVLAKLPP 498
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical
protein R04E5.8a protein.
Length = 997
Score = 28.3 bits (60), Expect = 7.2
Identities = 14/44 (31%), Positives = 14/44 (31%)
Frame = +3
Query: 537 PHPPVPEXAXAXXXXXXSDPPXXSXPXIPRPRXRXXTRPPXXXP 668
P PP P PP P P PR RPP P
Sbjct: 122 PPPPPPPRKSRAGGSSPPPPPPPRVPRTPPPRSPPPRRPPMTPP 165
Score = 27.9 bits (59), Expect = 9.5
Identities = 24/77 (31%), Positives = 28/77 (36%), Gaps = 5/77 (6%)
Frame = +2
Query: 590 GSPXXLXXGH--PPPSXPXXDASPAXXXSXXPAPXXAXWGG---PLPPQSRLSXTPPXLP 754
G P GH P P +ASP P P + GG P PP R+ TPP
Sbjct: 99 GYPVPGQEGHQVPAPQHGDHEASPPPP----PPPRKSRAGGSSPPPPPPPRVPRTPPPRS 154
Query: 755 CXTKXSPXXLLXPXXRP 805
+ P P RP
Sbjct: 155 PPPRRPPMTPPSPQRRP 171
>AF000193-3|AAB52890.1| 259|Caenorhabditis elegans Hypothetical
protein T20B6.3 protein.
Length = 259
Score = 28.3 bits (60), Expect = 7.2
Identities = 28/106 (26%), Positives = 28/106 (26%)
Frame = -1
Query: 682 GXXXRGXXXGGRVXXRXRGRGMXGXEXXGGSEXXXXXXAXAXSGTGG*GXXXGXGAGGVS 503
G G GG G G G G G GG G G G GG
Sbjct: 75 GRGGYGGSGGGAFGGFNGGYGQGGYGGGGDFGGGMGGGGYGGGGYGG-GGDGGGGYGGYG 133
Query: 502 RXGXGXXGXXKXCGGXXXXXXXXXXGXXXXXXXXGGXRXGVXGXGG 365
G G G GG G GG G G GG
Sbjct: 134 GGGYGGMGGGP--GGYGMGGYGGGGGGGGDFGGYGGGGMGGGGYGG 177
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,844,673
Number of Sequences: 27780
Number of extensions: 125371
Number of successful extensions: 576
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 340
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 461
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2087513582
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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