Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_T7_F24
         (847 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0435 + 3428552-3428636,3429242-3429352,3429434-3429738,342...   173   1e-43
11_01_0427 + 3274817-3274901,3275587-3275697,3275979-3276283,327...   173   1e-43
08_02_0918 - 22617388-22617693,22617799-22617848,22618538-226188...    28   8.1  

>12_01_0435 +
           3428552-3428636,3429242-3429352,3429434-3429738,
           3429821-3430230,3430323-3430556,3430934-3431378,
           3432300-3432390,3433292-3433518,3433786-3433861,
           3434009-3434134,3434221-3434384
          Length = 757

 Score =  173 bits (421), Expect = 1e-43
 Identities = 83/143 (58%), Positives = 99/143 (69%)
 Frame = -3

Query: 704 GQRHXEKPIPVDXVFAQDEMIDCIXXXXXXXXXXXTSRWHTKKLPRKTHKXXRKVACIGA 525
           G +  EK IPVD VF +DEMID I            +RW   +LPRKTH+  RKVACIGA
Sbjct: 198 GYKFFEKEIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGA 257

Query: 524 WHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITP 345
           WHP+RVS+TVARAGQ GYHHRTEMNKK+Y+IG     K G+   + A TE+D +EK ITP
Sbjct: 258 WHPARVSYTVARAGQNGYHHRTEMNKKVYKIG-----KSGQE-SHAACTEFDRTEKDITP 311

Query: 344 MGGFPHYGEVNNDFVMIQGLLHG 276
           MGGFPHYG V  D++MI+G   G
Sbjct: 312 MGGFPHYGVVKGDYLMIKGCCVG 334



 Score = 86.2 bits (204), Expect = 3e-17
 Identities = 38/52 (73%), Positives = 44/52 (84%)
 Frame = -1

Query: 292 KGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADK 137
           KGCC+GPKKR++TLR+SL   T R ALE+I LKFIDTSSKFGHGRFQT  +K
Sbjct: 329 KGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTDEK 380


>11_01_0427 +
           3274817-3274901,3275587-3275697,3275979-3276283,
           3276406-3276815,3276942-3277200
          Length = 389

 Score =  173 bits (421), Expect = 1e-43
 Identities = 83/143 (58%), Positives = 99/143 (69%)
 Frame = -3

Query: 704 GQRHXEKPIPVDXVFAQDEMIDCIXXXXXXXXXXXTSRWHTKKLPRKTHKXXRKVACIGA 525
           G +  EK IPVD VF +DEMID I            +RW   +LPRKTH+  RKVACIGA
Sbjct: 198 GYKFFEKEIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGA 257

Query: 524 WHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITP 345
           WHP+RVS+TVARAGQ GYHHRTEMNKK+Y+IG     K G+   + A TE+D +EK ITP
Sbjct: 258 WHPARVSYTVARAGQNGYHHRTEMNKKVYKIG-----KSGQE-SHAACTEFDRTEKDITP 311

Query: 344 MGGFPHYGEVNNDFVMIQGLLHG 276
           MGGFPHYG V  D++MI+G   G
Sbjct: 312 MGGFPHYGVVKGDYLMIKGCCVG 334



 Score = 93.5 bits (222), Expect = 2e-19
 Identities = 42/60 (70%), Positives = 48/60 (80%)
 Frame = -1

Query: 292 KGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLK 113
           KGCC+GPKKR++TLR+SL   T R ALE+I LKFIDTSSKFGHGRFQT  +K  F G LK
Sbjct: 329 KGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTDEKQRFFGKLK 388


>08_02_0918 -
           22617388-22617693,22617799-22617848,22618538-22618817,
           22619654-22620340,22622870-22622944,22623150-22623285,
           22624801-22625093,22625776-22626597
          Length = 882

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 10/79 (12%)
 Frame = -3

Query: 515 SRVSFTVARAGQKGYHHRTEMNKKIYRIGQG----------IHKKDGKVIKNNASTEYDL 366
           ++V F    +   GY H + +N ++  I  G          IH+ D   +      E  L
Sbjct: 360 AQVIFMNRESANNGYMHTSSVNYELETIRSGTWLDVEHPRKIHRLDLDAVDQQKQLEKYL 419

Query: 365 SEKSITPMGGFPHYGEVNN 309
           SEKS  P+  FP    V++
Sbjct: 420 SEKSNIPIPPFPDSSSVSS 438


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,787,305
Number of Sequences: 37544
Number of extensions: 409567
Number of successful extensions: 957
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 930
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 955
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2350456800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)