Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_T7_F23
         (871 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0299 - 17051570-17052474,17053542-17053755                       30   2.1  
03_01_0515 - 3864796-3865425                                           30   2.8  
04_03_0804 - 19844059-19844777,19844914-19844995,19846580-19846585     29   6.4  
12_02_1119 + 26213719-26213955,26214039-26214197,26214640-262147...    28   8.5  
08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,336...    28   8.5  
06_01_0486 - 3455030-3455770                                           28   8.5  
05_07_0332 - 29332520-29332818,29333511-29333725,29334380-293344...    28   8.5  

>12_02_0299 - 17051570-17052474,17053542-17053755
          Length = 372

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 19/56 (33%), Positives = 20/56 (35%)
 Frame = +3

Query: 690 PPXPAXXXXXXXWXXXPXXPXSPXXXXXPLXXXPPXXXPPPPXHXPXXRXPXXPXL 857
           PP PA       W   P  P  P     P+   PP   PPPP   P    P  P L
Sbjct: 255 PPPPAFPFPLPPWPWAPP-PAFPFPHLPPIFS-PPSPPPPPPPAFPFP-FPQLPPL 307



 Score = 29.9 bits (64), Expect = 2.8
 Identities = 17/54 (31%), Positives = 17/54 (31%)
 Frame = +3

Query: 690 PPXPAXXXXXXXWXXXPXXPXSPXXXXXPLXXXPPXXXPPPPXHXPXXRXPXXP 851
           PP PA           P  P  P     P    PP   PPPP   P    P  P
Sbjct: 292 PPPPAFPFPFPQLPPLPHFPPLPSFYPSP--PPPPPPPPPPPPSFPWPFPPLAP 343


>03_01_0515 - 3864796-3865425
          Length = 209

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 16/51 (31%), Positives = 16/51 (31%)
 Frame = +3

Query: 690 PPXPAXXXXXXXWXXXPXXPXSPXXXXXPLXXXPPXXXPPPPXHXPXXRXP 842
           PP PA           P    SP     P    PP   PPPP   P    P
Sbjct: 61  PPPPAAGPLMPPPPPPPSVTSSPPPPPLPPPPPPPAASPPPPPPSPPPPSP 111


>04_03_0804 - 19844059-19844777,19844914-19844995,19846580-19846585
          Length = 268

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = +1

Query: 784 WXPPXXXPPPPNTPPXXGXP 843
           W PP   PPPP  PP    P
Sbjct: 78  WPPPLPQPPPPCKPPPCEKP 97


>12_02_1119 +
           26213719-26213955,26214039-26214197,26214640-26214702,
           26214813-26214902,26214984-26215106,26215344-26215431,
           26217043-26217117,26218109-26218215
          Length = 313

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +1

Query: 790 PPXXXPPPPNTPP 828
           PP   PPPPN+PP
Sbjct: 15  PPPPPPPPPNSPP 27


>08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,
            33643-34147,34250-34358,34436-34548,34619-34806,
            35481-36129,36169-36691,36760-36911,37042-37141,
            37301-37416
          Length = 1530

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 14/43 (32%), Positives = 14/43 (32%)
 Frame = +3

Query: 738  PXXPXSPXXXXXPLXXXPPXXXPPPPXHXPXXRXPXXPXLXLP 866
            P  P        PL   PP   PPPP        P  P   LP
Sbjct: 1147 PPLPSDSPPCQPPLPPSPPPATPPPPPPLSPSLPPPPPPPPLP 1189


>06_01_0486 - 3455030-3455770
          Length = 246

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 13/43 (30%), Positives = 15/43 (34%)
 Frame = +3

Query: 738 PXXPXSPXXXXXPLXXXPPXXXPPPPXHXPXXRXPXXPXLXLP 866
           P  P +P     P    PP   PP P + P    P  P    P
Sbjct: 84  PRPPPTPPYVPSPPPYVPPYIPPPTPPYVPPYIPPPTPPYVPP 126


>05_07_0332 - 29332520-29332818,29333511-29333725,29334380-29334408,
            29334956-29335045,29335120-29335155,29335222-29336553,
            29337331-29337497,29337519-29337724,29337815-29338036,
            29338332-29338381,29338754-29338870,29339471-29339551,
            29339656-29339694,29340464-29340636,29340769-29340826,
            29340934-29340987,29341066-29341613,29341695-29341755,
            29342180-29342260,29342448-29342630,29342908-29343162,
            29343304-29343423,29343497-29344901,29344988-29345085,
            29345164-29345218,29345307-29345366,29346498-29346697
          Length = 2077

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +1

Query: 790  PPXXXPPPPNTPPXXGXP 843
            PP   PPPP  PP  G P
Sbjct: 1927 PPHAPPPPPPPPPVEGKP 1944


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,496,861
Number of Sequences: 37544
Number of extensions: 204825
Number of successful extensions: 2717
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2137
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2444475072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)